Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 RNU6-56P-201ENST00000516986 93 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 MIR4635-201ENST00000583759 79 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 AL031274.2-201ENST00000599419 203 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 JPX_2.1-201ENST00000614161 69 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 AL353997.5-201ENST00000618886 171 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-23P-201ENST00000363283 107 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-1080P-201ENST00000383982 107 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.521-201ENST00000384560 114 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 MIR515-2-201ENST00000384883 83 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 MIR515-1-201ENST00000384884 83 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 SNORD37.2-201ENST00000391075 66 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-131P-201ENST00000391144 107 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 AL356320.1-201ENST00000429616 163 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 AC233266.1-201ENST00000454518 96 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 RNU7-128P-201ENST00000517247 62 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 MIR548X2-201ENST00000579776 100 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 AC242852.1-201ENST00000612151 96 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 AC244015.1-201ENST00000622301 99 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 AC091895.1-201ENST00000624494 256 ntBASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
NKX2-4Q9H2Z4 FAM35CP-201ENST00000554755 2470 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 SNORD114-1-201ENST00000362705 72 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 SNORD115-3-201ENST00000363100 82 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 SNORA38-201ENST00000363946 132 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 RNU1-91P-201ENST00000364746 163 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-818P-201ENST00000364837 108 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.568-201ENST00000384742 113 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 MIR513C-201ENST00000401352 84 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 RNU2-55P-201ENST00000411146 174 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 UQCRHP3-201ENST00000451503 251 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 SNRPGP8-201ENST00000454064 226 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 CYCSP26-201ENST00000534107 320 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 MIR6079-201ENST00000635807 62 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 MIR3658-201ENST00000636291 56 ntBASIC2.74□□□□□ -1.97
NKX2-4Q9H2Z4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-1209P-201ENST00000363655 107 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.164-201ENST00000363709 102 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RNA5SP493-201ENST00000364115 91 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.796-201ENST00000364268 102 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.799-201ENST00000364992 102 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 DYNLT3P1-201ENST00000378574 347 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.432-201ENST00000384087 111 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 SNORA8-201ENST00000384574 139 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RPL21P3-201ENST00000395517 478 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 AL117342.1-201ENST00000404861 406 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 CST2P1-201ENST00000425770 87 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RPS27P1-201ENST00000450552 247 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-1299P-201ENST00000516316 100 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-426P-201ENST00000516464 97 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-1291P-201ENST00000516591 104 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 MIR1273D-201ENST00000577266 86 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 MIR3126-201ENST00000577443 74 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 uc_338.4-201ENST00000616635 176 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 AC018630.2-201ENST00000534866 2403 ntBASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
NKX2-4Q9H2Z4 SNORA33-201ENST00000363664 130 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.267-201ENST00000364679 109 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 MIR569-201ENST00000385228 96 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 SNORD11-201ENST00000459124 84 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 AC234781.5-201ENST00000508429 271 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 AC024995.1-201ENST00000523014 93 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 AC091178.2-201ENST00000584401 117 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 MIR6844-201ENST00000637122 62 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 U6.108-201ENST00000637764 58 ntBASIC2.72□□□□□ -1.97
NKX2-4Q9H2Z4 ZNF271P-202ENST00000465539 1970 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-862P-201ENST00000362804 105 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 SNORD113-1-201ENST00000365321 69 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-81P-201ENST00000365608 104 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 MIR562-201ENST00000384894 95 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 MIR29C-201ENST00000385231 88 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 RPL30P13-201ENST00000418873 348 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 RNU7-94P-201ENST00000459576 63 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 RN7SKP43-201ENST00000516173 320 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 SNORA25.12-201ENST00000516202 82 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-197P-201ENST00000516680 100 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-341P-201ENST00000516973 96 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 AC112693.2-201ENST00000556538 232 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 MIR3169-201ENST00000578032 83 ntBASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 216.1 ms