Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.73□□□□□ -2.53
USF3Q68DE3 MTND4LP25-201ENST00000570218 163 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 MIR3165-201ENST00000579874 75 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AC020891.4-201ENST00000605745 93 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AF250324.2-201ENST00000608299 610 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 RNU6-621P-201ENST00000364752 109 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 Y_RNA.415-201ENST00000384012 112 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 UQCRBP2-201ENST00000447827 297 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 snoU13.6-201ENST00000458785 104 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 SCARNA18-201ENST00000459004 134 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC-0.74□□□□□ -2.53
USF3Q68DE3 RNU6-1198P-201ENST00000516904 67 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-0.74□□□□□ -2.53
USF3Q68DE3 AC022418.1-201ENST00000624118 445 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 RNU6-1048P-201ENST00000364054 107 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 Y_RNA.302-201ENST00000364997 102 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 SNORA24-201ENST00000384096 131 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 MIR518F-201ENST00000384973 87 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 MT-TF-201ENST00000387314 71 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 MIR1284-201ENST00000408337 120 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 ZNF736P8Y-201ENST00000451913 669 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 RNU7-73P-201ENST00000458743 63 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-0.74□□□□□ -2.53
USF3Q68DE3 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-0.74□□□□□ -2.53
USF3Q68DE3 MIR4676-201ENST00000583078 72 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 BNIP3P39-201ENST00000601077 554 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 AL359999.1-201ENST00000604513 294 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 AL442067.1-201ENST00000613261 223 ntBASIC-0.74□□□□□ -2.53
USF3Q68DE3 RNU6-1115P-201ENST00000362490 106 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 RNU6-117P-201ENST00000365415 107 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 Y_RNA.498-201ENST00000384460 102 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 U8.17-201ENST00000391292 132 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 AC092447.3-201ENST00000426027 686 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 RNU2-11P-201ENST00000459191 187 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 snoU13.16-201ENST00000459350 104 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 RNU6-1003P-201ENST00000517099 105 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 AC105029.1-201ENST00000520250 669 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 POLR3GP1-201ENST00000594073 261 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 MIR6514-201ENST00000622549 70 ntBASIC-0.75□□□□□ -2.53
USF3Q68DE3 RNU6-1266P-201ENST00000362794 105 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 SNORA63C-201ENST00000364578 129 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 RNU6-47P-201ENST00000383866 107 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-0.76□□□□□ -2.53
USF3Q68DE3 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-0.76□□□□□ -2.53
USF3Q68DE3 SNORA70.25-201ENST00000612741 95 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 AC009159.2-201ENST00000617603 606 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 AC084368.1-201ENST00000620935 65 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 RNU5F-3P-201ENST00000363767 117 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 SNORA1.2-201ENST00000365189 134 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.76□□□□□ -2.53
USF3Q68DE3 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-0.76□□□□□ -2.53
USF3Q68DE3 AC119618.1-201ENST00000434191 222 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 AL138752.1-201ENST00000452964 351 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 MTATP6P14-201ENST00000455189 673 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 AC010424.1-201ENST00000506336 297 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-0.76□□□□□ -2.53
USF3Q68DE3 RNU6-881P-201ENST00000516813 102 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 MTND1P35-201ENST00000526739 508 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC-0.76□□□□□ -2.53
USF3Q68DE3 AC002044.1-201ENST00000606707 158 ntBASIC-0.76□□□□□ -2.53
USF3Q68DE3 SNORD114-7-201ENST00000362520 77 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 SNORA24.1-201ENST00000384401 135 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 RNU6-393P-201ENST00000384475 107 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.77□□□□□ -2.53
USF3Q68DE3 ELOCP4-201ENST00000420090 333 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 MTND3P9-201ENST00000429526 346 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 RPL39P25-201ENST00000449384 154 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 RNU6-1178P-201ENST00000516674 107 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 AC093023.1-201ENST00000547375 507 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 MIR4307-201ENST00000582802 84 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 ZNF299P-201ENST00000406845 1804 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 RNU6-434P-201ENST00000384376 107 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 RNU6-1199P-201ENST00000411249 104 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.77□□□□□ -2.53
USF3Q68DE3 SUMO1P3-201ENST00000439961 304 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 HMGN2P32-201ENST00000444648 269 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-0.77□□□□□ -2.53
USF3Q68DE3 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.77□□□□□ -2.53
USF3Q68DE3 RPL23AP75-201ENST00000491601 451 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 AC010587.1-201ENST00000505809 469 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 PRDX4P1-201ENST00000507189 574 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 AC093303.1-201ENST00000514549 295 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 RNU6-323P-201ENST00000521915 107 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC-0.77□□□□□ -2.53
USF3Q68DE3 AL136370.1-201ENST00000608166 691 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 AC005609.4-201ENST00000625071 447 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 AC010332.2-201ENST00000613083 1904 ntBASIC-0.77□□□□□ -2.53
USF3Q68DE3 MIR655-201ENST00000362159 97 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 MIR148A-201ENST00000362215 68 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 Y_RNA.22-201ENST00000362492 102 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 Y_RNA.28-201ENST00000362554 111 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 RNU6-609P-201ENST00000365459 107 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.78□□□□□ -2.53
USF3Q68DE3 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms