Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC006435.5-201ENST00000624486 112 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
COL4A3Q01955 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
COL4A3Q01955 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.45□□□□□ -2.02
COL4A3Q01955 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL4A3Q01955 MIR337-201ENST00000362281 93 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 RNY1P10-201ENST00000363268 113 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 SNORA64-201ENST00000384674 134 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
COL4A3Q01955 Y_RNA.584-201ENST00000391090 114 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 HMGN2P18-201ENST00000450680 270 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 RN7SKP179-201ENST00000516126 217 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 SNORA70.14-201ENST00000516205 110 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
COL4A3Q01955 AC015720.1-201ENST00000565251 277 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 MIR4506-201ENST00000584693 77 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
COL4A3Q01955 CENPCP1-201ENST00000533085 2578 ntBASIC2.45□□□□□ -2.02
COL4A3Q01955 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL4A3Q01955 DYNLT3P1-201ENST00000378574 347 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RNU6-1274P-201ENST00000384557 107 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RNU6-1235P-201ENST00000384559 107 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 Y_RNA.563-201ENST00000384707 108 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 SNORA80E-201ENST00000384744 137 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RPS12P2-201ENST00000439728 269 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RNU6-498P-201ENST00000459468 107 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RPS27P22-201ENST00000478056 241 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 AC026436.1-201ENST00000510537 270 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 AC090142.3-201ENST00000519012 385 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A3Q01955 MIR2681-201ENST00000581814 105 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 U7.2-201ENST00000607576 63 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL4A3Q01955 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
COL4A3Q01955 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL4A3Q01955 RNU6-1056P-201ENST00000383996 107 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
COL4A3Q01955 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.44□□□□□ -2.02
COL4A3Q01955 MICF-203ENST00000432679 129 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RPL23AP42-201ENST00000471152 471 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RNU6-1299P-201ENST00000516316 100 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 RNU6-197P-201ENST00000516680 100 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 SCARNA3-201ENST00000517097 143 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 SCARNA11.3-201ENST00000517276 130 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 AC090049.2-201ENST00000550377 109 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 AL049861.1-201ENST00000603130 150 ntBASIC2.44□□□□□ -2.02
COL4A3Q01955 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
COL4A3Q01955 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL4A3Q01955 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.43□□□□□ -2.02
COL4A3Q01955 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.43□□□□□ -2.02
COL4A3Q01955 RNA5SP456-201ENST00000364002 114 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 Y_RNA.432-201ENST00000384087 111 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 SNORA72-201ENST00000384339 132 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 U6atac.2-201ENST00000408644 118 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 AC008134.1-201ENST00000420943 193 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 AC245047.4-201ENST00000433189 144 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 AC018634.1-201ENST00000437554 401 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 AC016925.1-201ENST00000458303 298 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 RAC1P5-201ENST00000512182 576 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 RNU6-965P-201ENST00000516721 96 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 AC023043.3-201ENST00000593113 385 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 MIR5739-201ENST00000619803 80 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
COL4A3Q01955 AL391516.1-201ENST00000554380 2449 ntBASIC2.43□□□□□ -2.02
COL4A3Q01955 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A3Q01955 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A3Q01955 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A3Q01955 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A3Q01955 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC2.42□□□□□ -2.02
COL4A3Q01955 RPL30P4-201ENST00000429309 333 ntBASIC2.42□□□□□ -2.02
COL4A3Q01955 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.42□□□□□ -2.02
COL4A3Q01955 AC080013.2-201ENST00000460866 323 ntBASIC2.42□□□□□ -2.02
COL4A3Q01955 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.42□□□□□ -2.02
COL4A3Q01955 Y_RNA.692-201ENST00000516627 105 ntBASIC2.42□□□□□ -2.02
COL4A3Q01955 AC018630.3-201ENST00000542637 96 ntBASIC2.42□□□□□ -2.02
COL4A3Q01955 MIR1291-201ENST00000627649 87 ntBASIC2.42□□□□□ -2.02
COL4A3Q01955 MIR1248-201ENST00000629190 106 ntBASIC2.42□□□□□ -2.02
COL4A3Q01955 Z82209.1-201ENST00000422141 2135 ntBASIC2.42□□□□□ -2.02
COL4A3Q01955 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL4A3Q01955 RNY1P11-201ENST00000363759 113 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 SNORA25.7-201ENST00000364375 127 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RNU6-915P-201ENST00000364943 103 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RNU6-546P-201ENST00000383991 107 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RNU6-484P-201ENST00000384016 107 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RNU6-1328P-201ENST00000410938 106 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RNA5SP344-201ENST00000411081 104 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RN7SKP101-201ENST00000411376 320 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 ARF4P2-201ENST00000430209 526 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.41□□□□□ -2.02
COL4A3Q01955 SNORA4.4-201ENST00000515921 135 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 SNORD59.2-201ENST00000516873 68 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 AC120024.3-201ENST00000603167 156 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 uc_338.4-201ENST00000616635 176 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 MIR7515-201ENST00000637837 67 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.41□□□□□ -2.02
COL4A3Q01955 AC103988.1-201ENST00000566382 2177 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.41□□□□□ -2.02
COL4A3Q01955 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL4A3Q01955 RNA5SP139-201ENST00000364340 117 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RNU6-117P-201ENST00000365415 107 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms