Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 RNA5SP480-201ENST00000516840 109 ntBASIC2.76□□□□□ -1.97
MRE11P49959 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.76□□□□□ -1.97
MRE11P49959 MIR4431-201ENST00000579990 94 ntBASIC2.76□□□□□ -1.97
MRE11P49959 MIR5688-201ENST00000580619 83 ntBASIC2.76□□□□□ -1.97
MRE11P49959 MIR1248-201ENST00000629190 106 ntBASIC2.76□□□□□ -1.97
MRE11P49959 AP000553.5-201ENST00000641933 54 ntBASIC2.76□□□□□ -1.97
MRE11P49959 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MRE11P49959 RNA5SP325-201ENST00000363756 130 ntBASIC2.75□□□□□ -1.97
MRE11P49959 RNU6-271P-201ENST00000363858 105 ntBASIC2.75□□□□□ -1.97
MRE11P49959 RNU6-144P-201ENST00000383951 107 ntBASIC2.75□□□□□ -1.97
MRE11P49959 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.75□□□□□ -1.97
MRE11P49959 RNU7-26P-201ENST00000458980 63 ntBASIC2.75□□□□□ -1.97
MRE11P49959 AC117454.1-201ENST00000491120 168 ntBASIC2.75□□□□□ -1.97
MRE11P49959 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.75□□□□□ -1.97
MRE11P49959 AC023141.11-201ENST00000508864 202 ntBASIC2.75□□□□□ -1.97
MRE11P49959 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.75□□□□□ -1.97
MRE11P49959 RNU7-115P-201ENST00000516433 55 ntBASIC2.75□□□□□ -1.97
MRE11P49959 RNU7-121P-201ENST00000516604 62 ntBASIC2.75□□□□□ -1.97
MRE11P49959 AC109810.1-201ENST00000534066 224 ntBASIC2.75□□□□□ -1.97
MRE11P49959 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.75□□□□□ -1.97
MRE11P49959 AC067747.1-201ENST00000608026 250 ntBASIC2.75□□□□□ -1.97
MRE11P49959 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.75□□□□□ -1.97
MRE11P49959 MIR548AY-201ENST00000617669 107 ntBASIC2.75□□□□□ -1.97
MRE11P49959 AC068647.2-201ENST00000637380 353 ntBASIC2.75□□□□□ -1.97
MRE11P49959 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MRE11P49959 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
MRE11P49959 AC009487.4-201ENST00000624969 3585 ntBASIC2.75□□□□□ -1.97
MRE11P49959 Y_RNA.215-201ENST00000364204 112 ntBASIC2.74□□□□□ -1.97
MRE11P49959 RNU6-818P-201ENST00000364837 108 ntBASIC2.74□□□□□ -1.97
MRE11P49959 RNA5SP37-201ENST00000365420 130 ntBASIC2.74□□□□□ -1.97
MRE11P49959 RNU6-418P-201ENST00000384035 107 ntBASIC2.74□□□□□ -1.97
MRE11P49959 Y_RNA.488-201ENST00000384403 102 ntBASIC2.74□□□□□ -1.97
MRE11P49959 Y_RNA.540-201ENST00000384638 111 ntBASIC2.74□□□□□ -1.97
MRE11P49959 RNU6-131P-201ENST00000391144 107 ntBASIC2.74□□□□□ -1.97
MRE11P49959 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
MRE11P49959 HMGN2P18-201ENST00000450680 270 ntBASIC2.74□□□□□ -1.97
MRE11P49959 AC245047.8-201ENST00000456455 284 ntBASIC2.74□□□□□ -1.97
MRE11P49959 AC090255.1-201ENST00000495779 349 ntBASIC2.74□□□□□ -1.97
MRE11P49959 RNU6-948P-201ENST00000516374 107 ntBASIC2.74□□□□□ -1.97
MRE11P49959 SNORD116-25-201ENST00000516517 92 ntBASIC2.74□□□□□ -1.97
MRE11P49959 RNU6-1007P-201ENST00000516586 107 ntBASIC2.74□□□□□ -1.97
MRE11P49959 AC025647.1-201ENST00000517879 253 ntBASIC2.74□□□□□ -1.97
MRE11P49959 MIR1273D-201ENST00000577266 86 ntBASIC2.74□□□□□ -1.97
MRE11P49959 MIR4724-201ENST00000579485 89 ntBASIC2.74□□□□□ -1.97
MRE11P49959 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.74□□□□□ -1.97
MRE11P49959 AL391903.3-201ENST00000612158 163 ntBASIC2.74□□□□□ -1.97
MRE11P49959 Y_RNA.778-201ENST00000620203 90 ntBASIC2.74□□□□□ -1.97
MRE11P49959 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
MRE11P49959 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.74□□□□□ -1.97
MRE11P49959 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
MRE11P49959 MIR367-201ENST00000362299 68 ntBASIC2.73□□□□□ -1.97
MRE11P49959 Y_RNA.229-201ENST00000364347 113 ntBASIC2.73□□□□□ -1.97
MRE11P49959 SNORA67.1-201ENST00000364749 141 ntBASIC2.73□□□□□ -1.97
MRE11P49959 RNU6-407P-201ENST00000365280 104 ntBASIC2.73□□□□□ -1.97
MRE11P49959 Y_RNA.343-201ENST00000365354 112 ntBASIC2.73□□□□□ -1.97
MRE11P49959 RNU6-438P-201ENST00000365561 103 ntBASIC2.73□□□□□ -1.97
MRE11P49959 RNU6-1235P-201ENST00000384559 107 ntBASIC2.73□□□□□ -1.97
MRE11P49959 RNU6-1072P-201ENST00000384703 107 ntBASIC2.73□□□□□ -1.97
MRE11P49959 RNU6-443P-201ENST00000384780 107 ntBASIC2.73□□□□□ -1.97
MRE11P49959 MIR518C-201ENST00000384822 101 ntBASIC2.73□□□□□ -1.97
MRE11P49959 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.73□□□□□ -1.97
MRE11P49959 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.73□□□□□ -1.97
MRE11P49959 RNU6-498P-201ENST00000459468 107 ntBASIC2.73□□□□□ -1.97
MRE11P49959 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.73□□□□□ -1.97
MRE11P49959 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.73□□□□□ -1.97
MRE11P49959 AC027419.1-201ENST00000522976 328 ntBASIC2.73□□□□□ -1.97
MRE11P49959 MIR5694-201ENST00000581190 76 ntBASIC2.73□□□□□ -1.97
MRE11P49959 AP003357.1-201ENST00000604497 148 ntBASIC2.73□□□□□ -1.97
MRE11P49959 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
MRE11P49959 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
MRE11P49959 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
MRE11P49959 AL356292.1-201ENST00000283110 373 ntBASIC2.72□□□□□ -1.97
MRE11P49959 RNU6-151P-201ENST00000364158 107 ntBASIC2.72□□□□□ -1.97
MRE11P49959 RNU6-546P-201ENST00000383991 107 ntBASIC2.72□□□□□ -1.97
MRE11P49959 RNU6-1323P-201ENST00000384025 107 ntBASIC2.72□□□□□ -1.97
MRE11P49959 Y_RNA.497-201ENST00000384447 98 ntBASIC2.72□□□□□ -1.97
MRE11P49959 Y_RNA.568-201ENST00000384742 113 ntBASIC2.72□□□□□ -1.97
MRE11P49959 MIR95-201ENST00000385072 81 ntBASIC2.72□□□□□ -1.97
MRE11P49959 MT-TT-201ENST00000387460 66 ntBASIC2.72□□□□□ -1.97
MRE11P49959 SNORA36B-201ENST00000410438 131 ntBASIC2.72□□□□□ -1.97
MRE11P49959 RNU2-32P-201ENST00000411193 191 ntBASIC2.72□□□□□ -1.97
MRE11P49959 AC016909.1-201ENST00000415916 166 ntBASIC2.72□□□□□ -1.97
MRE11P49959 AL162725.1-201ENST00000435405 301 ntBASIC2.72□□□□□ -1.97
MRE11P49959 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.72□□□□□ -1.97
MRE11P49959 RNA5SP20-201ENST00000515976 84 ntBASIC2.72□□□□□ -1.97
MRE11P49959 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.72□□□□□ -1.97
MRE11P49959 AC022616.8-201ENST00000533569 253 ntBASIC2.72□□□□□ -1.97
MRE11P49959 MIR5739-201ENST00000619803 80 ntBASIC2.72□□□□□ -1.97
MRE11P49959 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
MRE11P49959 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
MRE11P49959 RNU6-383P-201ENST00000410864 94 ntBASIC2.71□□□□□ -1.98
MRE11P49959 AL137159.1-201ENST00000452808 512 ntBASIC2.71□□□□□ -1.98
MRE11P49959 AC107027.2-201ENST00000512197 115 ntBASIC2.71□□□□□ -1.98
MRE11P49959 RNA5SP490-201ENST00000517141 136 ntBASIC2.71□□□□□ -1.98
MRE11P49959 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.71□□□□□ -1.98
MRE11P49959 AC127455.1-201ENST00000565496 145 ntBASIC2.71□□□□□ -1.98
MRE11P49959 snoU13.31-201ENST00000607291 104 ntBASIC2.71□□□□□ -1.98
MRE11P49959 AC006435.5-201ENST00000624486 112 ntBASIC2.71□□□□□ -1.98
MRE11P49959 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
MRE11P49959 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms