Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORA40.6-201ENST00000391153 128 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXC9P31274 AC073910.1-201ENST00000445047 438 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 AC098869.1-201ENST00000481627 292 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 SNORA70.12-201ENST00000516084 153 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 RNU7-99P-201ENST00000516271 62 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 AC024995.1-201ENST00000523014 93 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 DEFB117-201ENST00000602356 141 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.78□□□□□ -2.12
HOXC9P31274 AL360085.1-201ENST00000604713 532 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 AC091895.1-201ENST00000624494 256 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.78□□□□□ -2.12
HOXC9P31274 AC099654.10-201ENST00000640395 161 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 AP000648.3-201ENST00000623539 4507 ntBASIC1.78□□□□□ -2.12
HOXC9P31274 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
HOXC9P31274 Y_RNA.64-201ENST00000362845 102 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 SNORD81.1-201ENST00000363064 77 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 Y_RNA.224-201ENST00000364308 111 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 SNORA63C-201ENST00000364578 129 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 RNU6-296P-201ENST00000384608 107 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 RPL21P38-201ENST00000418090 167 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 AL606517.2-201ENST00000442855 241 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 LINC01399-202ENST00000458450 244 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 SEPT14P8-201ENST00000508026 178 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 SCARNA15.1-201ENST00000516384 125 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.77□□□□□ -2.13
HOXC9P31274 SNORD113-5-201ENST00000607261 78 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 AC127459.3-201ENST00000624328 466 ntBASIC1.77□□□□□ -2.13
HOXC9P31274 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.77□□□□□ -2.13
HOXC9P31274 MIR96-201ENST00000362288 78 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 Y_RNA.118-201ENST00000363300 101 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 SNORA4.2-201ENST00000365313 147 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 RNU6-439P-201ENST00000384188 106 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 MIR518E-201ENST00000385252 88 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 SNORD115-46-201ENST00000390982 71 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 RPL21P1-201ENST00000399532 476 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 POLR2KP2-201ENST00000438155 177 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 HSPE1P9-201ENST00000440046 311 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 AC069257.2-201ENST00000441819 155 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.76□□□□□ -2.13
HOXC9P31274 RNU6-1278P-201ENST00000516130 107 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 RNA5SP61-201ENST00000516453 100 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 RNU6-1337P-201ENST00000516525 95 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 RPL21P9-201ENST00000556149 474 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 MIR6078-201ENST00000611069 100 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.76□□□□□ -2.13
HOXC9P31274 RNU6-238P-201ENST00000363313 106 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 SNORA63D-201ENST00000364359 132 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 Y_RNA.361-201ENST00000365515 120 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 Y_RNA.383-201ENST00000383855 97 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 RNU6-203P-201ENST00000384038 104 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 Y_RNA.459-201ENST00000384251 102 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
HOXC9P31274 AC009310.1-201ENST00000414414 451 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 RNU6-635P-201ENST00000516651 102 ntBASIC1.75□□□□□ -2.13
HOXC9P31274 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.75□□□□□ -2.13
HOXC9P31274 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.75□□□□□ -2.13
HOXC9P31274 Y_RNA.145-201ENST00000363527 102 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 Y_RNA.172-201ENST00000363765 102 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 Y_RNA.276-201ENST00000364732 109 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 SNORD116-13-201ENST00000384408 92 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 Y_RNA.512-201ENST00000384518 102 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 RNU6-738P-201ENST00000384531 106 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 MIR215-201ENST00000384858 110 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
HOXC9P31274 RNU6-855P-201ENST00000410395 104 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 RN7SKP51-201ENST00000410781 304 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 AC010154.1-201ENST00000425857 269 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 AC245047.3-201ENST00000429428 127 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 DYNLT3P2-201ENST00000442517 295 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 HSPE1P25-201ENST00000455484 251 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 MTND5P22-201ENST00000458380 195 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 RPS26P45-201ENST00000471748 340 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 RPL36AP21-201ENST00000490372 323 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.74□□□□□ -2.13
HOXC9P31274 RNU6-327P-201ENST00000516270 127 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 AP003733.2-201ENST00000529409 171 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 MIR4713-201ENST00000582691 75 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 AC022217.4-201ENST00000604389 163 ntBASIC1.74□□□□□ -2.13
HOXC9P31274 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
HOXC9P31274 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
HOXC9P31274 RNU4-90P-201ENST00000362773 141 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 Y_RNA.162-201ENST00000363683 102 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 Y_RNA.222-201ENST00000364264 102 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 Y_RNA.267-201ENST00000364679 109 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 RNU6-117P-201ENST00000365415 107 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 RNU2-61P-201ENST00000411069 191 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.73□□□□□ -2.13
HOXC9P31274 MTND2P23-201ENST00000422990 651 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 RNU7-34P-201ENST00000459394 64 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 AC091021.1-201ENST00000468051 388 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 AC025465.3-201ENST00000510570 311 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 RNU6-496P-201ENST00000516145 99 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 AC022254.1-201ENST00000567857 235 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 AC010900.2-201ENST00000604508 210 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 MIR6079-201ENST00000635807 62 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 AC018630.2-201ENST00000534866 2403 ntBASIC1.73□□□□□ -2.13
HOXC9P31274 SNORD114-7-201ENST00000362520 77 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 snoU2_19.2-201ENST00000363024 80 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms