| TFE3 | P19532 | RNU6-851P-201 | ENST00000384565 | 107 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | AL031121.1-201 | ENST00000406553 | 254 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | RAB6C-AS1-202 | ENST00000433431 | 123 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | AL049830.1-201 | ENST00000468034 | 425 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | AL163195.1-201 | ENST00000496941 | 348 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | RNU6-504P-201 | ENST00000516568 | 104 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | ZMYM1-210 | ENST00000611874 | 4466 nt | APPRIS P1 TSL 2 BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | OR2L2-203 | ENST00000642011 | 4225 nt | APPRIS P1 BASIC | 2.92 | □□□□□ -1.94 | | |
| TFE3 | P19532 | USP45-208 | ENST00000500704 | 5826 nt | APPRIS P1 TSL 5 BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | Y_RNA.71-201 | ENST00000362892 | 104 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | SNORA33-201 | ENST00000363664 | 130 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | SNORD56.5-201 | ENST00000364281 | 72 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | RNU6-915P-201 | ENST00000364943 | 103 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | SNORD116-14-201 | ENST00000383894 | 92 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | SNORD116-17-201 | ENST00000383929 | 92 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | Y_RNA.486-201 | ENST00000384398 | 107 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | SNORD116-15-201 | ENST00000384445 | 92 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | SNORD116-19-201 | ENST00000384729 | 92 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | RNU7-26P-201 | ENST00000458980 | 63 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | NDUFA4P2-201 | ENST00000489989 | 244 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | AC006386.2-201 | ENST00000624491 | 75 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | AC012005.1-201 | ENST00000624575 | 75 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| TFE3 | P19532 | MIR126-201 | ENST00000362291 | 85 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | Y_RNA.218-201 | ENST00000364218 | 104 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU1-91P-201 | ENST00000364746 | 163 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC107083.1-201 | ENST00000439643 | 279 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | U91324.1-201 | ENST00000442864 | 447 nt | TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RPL39P40-201 | ENST00000445481 | 146 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AL353614.1-201 | ENST00000445631 | 206 nt | TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | CFLAR-AS1-202 | ENST00000474886 | 223 nt | TSL 3 BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU6-1333P-201 | ENST00000516162 | 93 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RN7SKP282-201 | ENST00000516824 | 299 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC107016.2-201 | ENST00000547968 | 190 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | Y_RNA.757-201 | ENST00000578934 | 114 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC131055.1-201 | ENST00000584626 | 316 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC005786.1-201 | ENST00000588553 | 154 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC004832.5-201 | ENST00000608677 | 401 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | ZNF117-204 | ENST00000620222 | 5317 nt | APPRIS P1 TSL 1 (best) BASIC | 2.9 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU1-58P-201 | ENST00000362413 | 163 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SNORA1B-201 | ENST00000362535 | 133 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU6-1290P-201 | ENST00000362957 | 109 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SNORD115-3-201 | ENST00000363100 | 82 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNA5SP205-201 | ENST00000364653 | 136 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | Y_RNA.629-201 | ENST00000411368 | 105 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | MRPS17P9-201 | ENST00000511924 | 393 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC008507.4-201 | ENST00000585464 | 127 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | ZNF861P-201 | ENST00000588126 | 639 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AL591926.4-201 | ENST00000616895 | 298 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| TFE3 | P19532 | EYS-202 | ENST00000342421 | 2168 nt | TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | Y_RNA.120-201 | ENST00000363304 | 110 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SNORA80A-201 | ENST00000363922 | 136 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SNORA12.1-201 | ENST00000390873 | 148 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AL590004.2-201 | ENST00000404787 | 371 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | NDUFB4P4-201 | ENST00000404822 | 243 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | ARHGAP15-202 | ENST00000409869 | 2968 nt | TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNA5SP344-201 | ENST00000411081 | 104 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | CYCSP49-201 | ENST00000420810 | 319 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | FO680682.1-201 | ENST00000421261 | 345 nt | TSL 3 BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | FTH1P12-201 | ENST00000432137 | 551 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC091133.1-201 | ENST00000435491 | 483 nt | TSL 3 BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | LINC00393-201 | ENST00000443621 | 282 nt | TSL 3 BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU4-57P-201 | ENST00000515980 | 135 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SNORA18.4-201 | ENST00000516440 | 124 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU6-56P-201 | ENST00000516986 | 93 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AL359881.1-201 | ENST00000602916 | 267 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | CTSLP2-204 | ENST00000629029 | 392 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| TFE3 | P19532 | Y_RNA.66-201 | ENST00000362862 | 102 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SNORD18B-201 | ENST00000365659 | 72 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | MIR802-201 | ENST00000390235 | 94 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AL138827.1-201 | ENST00000402666 | 306 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU6-735P-201 | ENST00000410612 | 107 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | MLLT10P1-201 | ENST00000418346 | 262 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC087499.2-201 | ENST00000432861 | 149 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AC099677.2-201 | ENST00000436385 | 175 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RN7SL297P-201 | ENST00000483161 | 293 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNA5SP137-201 | ENST00000516833 | 135 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AL365205.2-201 | ENST00000594586 | 68 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | LRRD1-203 | ENST00000430130 | 2661 nt | APPRIS P1 TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | GPR22-201 | ENST00000304402 | 2942 nt | APPRIS P1 TSL 1 (best) BASIC | 2.87 | □□□□□ -1.95 | | |
| TFE3 | P19532 | IDE-201 | ENST00000265986 | 5877 nt | APPRIS P1 TSL 1 (best) BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SLC6A15-202 | ENST00000309283 | 3108 nt | TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | FOXP2-211 | ENST00000408937 | 6443 nt | TSL 1 (best) BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | CHD9-218 | ENST00000566029 | 13110 nt | APPRIS P1 TSL 1 (best) BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SLCO1B3-202 | ENST00000381545 | 2805 nt | APPRIS P1 TSL 2 BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | LINC00645-203 | ENST00000557399 | 3512 nt | TSL 1 (best) BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | EXOC6-203 | ENST00000371552 | 3564 nt | TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | MAPK10-266 | ENST00000641066 | 6555 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNY1P11-201 | ENST00000363759 | 113 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | SNORD24-201 | ENST00000383884 | 75 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU6-1336P-201 | ENST00000383886 | 109 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU1-148P-201 | ENST00000384472 | 162 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | MIR522-201 | ENST00000385071 | 87 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | MIR624-201 | ENST00000385217 | 97 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNA5SP127-201 | ENST00000411051 | 133 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | AL035415.1-201 | ENST00000447150 | 289 nt | TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | TRBV12-1-201 | ENST00000479785 | 344 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RN7SKP179-201 | ENST00000516126 | 217 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNA5SP367-201 | ENST00000516557 | 118 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | Y_RNA.692-201 | ENST00000516627 | 105 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| TFE3 | P19532 | RNU7-28P-201 | ENST00000516759 | 62 nt | BASIC | 2.86 | □□□□□ -1.95 | | |