Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-1338P-201ENST00000516328 91 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 DEFB108E-201ENST00000524692 240 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.5□□□□□ -2.17
HOXD4P09016 SNORD53B-201ENST00000577887 78 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 MIR4438-201ENST00000585271 93 ntBASIC1.5□□□□□ -2.17
HOXD4P09016 RNU4-80P-201ENST00000363200 141 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 RNU6-271P-201ENST00000363858 105 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 RNU1-96P-201ENST00000364163 162 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 Y_RNA.237-201ENST00000364439 102 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 Y_RNA.269-201ENST00000364685 89 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 MTCO1P5-201ENST00000433573 344 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 RNU7-95P-201ENST00000459222 64 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 RNA5SP57-201ENST00000459463 123 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.49□□□□□ -2.17
HOXD4P09016 AC010409.1-201ENST00000487382 476 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 RNU7-128P-201ENST00000517247 62 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 CBX3P4-201ENST00000538909 354 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 AL137100.2-201ENST00000555786 315 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 AC010900.2-201ENST00000604508 210 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 U6.73-201ENST00000619194 103 ntBASIC1.49□□□□□ -2.17
HOXD4P09016 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.49□□□□□ -2.17
HOXD4P09016 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.48□□□□□ -2.17
HOXD4P09016 SNORD114-7-201ENST00000362520 77 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 RNU1-22P-201ENST00000363334 158 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 Y_RNA.136-201ENST00000363444 102 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 Y_RNA.172-201ENST00000363765 102 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 Y_RNA.193-201ENST00000363979 102 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 Y_RNA.508-201ENST00000384502 114 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 Y_RNA.518-201ENST00000384552 113 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 RNU6-1186P-201ENST00000410429 97 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 RN7SKP51-201ENST00000410781 304 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.48□□□□□ -2.17
HOXD4P09016 CST2P1-201ENST00000425770 87 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 AL135790.2-201ENST00000437701 267 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 AC097462.1-201ENST00000514125 324 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 SNORA70.12-201ENST00000516084 153 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 Y_RNA.668-201ENST00000516233 93 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 SCARNA24.2-201ENST00000516968 130 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 MIR3198-2-201ENST00000577868 80 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 MIR5094-201ENST00000578766 85 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 MIR3149-201ENST00000584629 83 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 AC103810.8-201ENST00000607347 118 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 U4.1-201ENST00000620349 87 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 U6.108-201ENST00000637764 58 ntBASIC1.48□□□□□ -2.17
HOXD4P09016 AL391987.6-201ENST00000305671 199 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 RNU6-117P-201ENST00000365415 107 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 RNU6-326P-201ENST00000365480 107 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.47□□□□□ -2.17
HOXD4P09016 Y_RNA.452-201ENST00000384202 108 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 MIR517C-201ENST00000385103 95 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 SNORA53-201ENST00000391141 249 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 RNU2-38P-201ENST00000410856 79 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.47□□□□□ -2.17
HOXD4P09016 SERF1AP1-201ENST00000514575 187 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 RNU6-1337P-201ENST00000516525 95 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 RNU6-63P-201ENST00000516690 95 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 RNU2-31P-201ENST00000516954 155 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 SNORA44.1-201ENST00000517031 108 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.47□□□□□ -2.17
HOXD4P09016 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.47□□□□□ -2.17
HOXD4P09016 RPL21P9-201ENST00000556149 474 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.47□□□□□ -2.17
HOXD4P09016 U6.104-201ENST00000637979 90 ntBASIC1.47□□□□□ -2.17
HOXD4P09016 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
HOXD4P09016 Y_RNA.288-201ENST00000364854 92 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 RNU6-702P-201ENST00000364982 107 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 SNORD116-13-201ENST00000384408 92 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 Y_RNA.556-201ENST00000384677 113 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 RNU6-855P-201ENST00000410395 104 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 EBAG9P1-201ENST00000418955 543 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 AC245047.4-201ENST00000433189 144 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.46□□□□□ -2.18
HOXD4P09016 SNORD127-201ENST00000458892 86 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 AC091959.1-201ENST00000495857 238 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 AC008834.1-201ENST00000511612 175 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 RNU6-191P-201ENST00000516295 94 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 RNU7-172P-201ENST00000517125 64 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 AC073413.2-201ENST00000604332 360 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 AC069114.2-201ENST00000604699 304 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 BX248123.2-201ENST00000606318 124 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.46□□□□□ -2.18
HOXD4P09016 AL359075.3-201ENST00000613288 217 ntBASIC1.46□□□□□ -2.18
HOXD4P09016 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
HOXD4P09016 MIR335-201ENST00000362173 94 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 SNORA25.1-201ENST00000362326 128 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 Y_RNA.355-201ENST00000365462 98 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 MIR515-2-201ENST00000384883 83 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 MIR515-1-201ENST00000384884 83 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 RNA5SP323-201ENST00000391094 133 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 RNU6-710P-201ENST00000410424 105 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 RNA5SP100-201ENST00000410903 110 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 RNA5SP59-201ENST00000410922 110 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 HSPE1P13-201ENST00000451143 297 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 AL163195.1-201ENST00000496941 348 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 232.6 ms