| MT1A | P04731 | AL445523.1-201 | ENST00000451184 | 1362 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.49-201 | ENST00000362714 | 112 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1266P-201 | ENST00000362794 | 105 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.145-201 | ENST00000363527 | 102 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | SNORD18.1-201 | ENST00000363807 | 70 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.228-201 | ENST00000364346 | 98 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-740P-201 | ENST00000364734 | 105 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-190P-201 | ENST00000384154 | 102 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-708P-201 | ENST00000384217 | 107 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | SNORA24.1-201 | ENST00000384401 | 135 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.504-201 | ENST00000384481 | 104 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1001P-201 | ENST00000411265 | 100 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | FNDC1-IT1-201 | ENST00000419703 | 516 nt | TSL 3 BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC090844.1-201 | ENST00000422019 | 156 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | AL356010.2-201 | ENST00000422844 | 197 nt | TSL 3 BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | USMG5P1-201 | ENST00000425964 | 177 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | MTATP6P17-201 | ENST00000431030 | 672 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | MRPS10P1-201 | ENST00000448483 | 130 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | USP9YP12-201 | ENST00000450481 | 570 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC026414.1-201 | ENST00000504046 | 698 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC020891.3-201 | ENST00000560011 | 363 nt | TSL 3 BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | FRG2DP-202 | ENST00000566967 | 323 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC016252.1-201 | ENST00000609721 | 474 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | TCL6_2.1-201 | ENST00000615162 | 119 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | AL354950.2-201 | ENST00000617939 | 290 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | NPPA-AS1_2.1-201 | ENST00000618496 | 149 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC010608.3-201 | ENST00000625048 | 527 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1115P-201 | ENST00000362490 | 106 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-403P-201 | ENST00000363163 | 104 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1036P-201 | ENST00000383959 | 104 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.430-201 | ENST00000384081 | 110 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | SNORD38B-201 | ENST00000384690 | 67 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1250P-201 | ENST00000391218 | 107 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | AL158050.1-201 | ENST00000416077 | 457 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | AL135908.1-201 | ENST00000431394 | 446 nt | TSL 3 BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | TMEM212-IT1-201 | ENST00000456146 | 470 nt | TSL 3 BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNA5SP484-201 | ENST00000458857 | 111 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.653-201 | ENST00000459091 | 95 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU2-11P-201 | ENST00000459191 | 187 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.697-201 | ENST00000516776 | 113 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | DEFB131E-201 | ENST00000532329 | 154 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC084365.1-201 | ENST00000552470 | 310 nt | TSL 3 BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR4473-201 | ENST00000583731 | 91 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC091178.2-201 | ENST00000584401 | 117 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | DEFB131E-202 | ENST00000602581 | 683 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | UGP2-231 | ENST00000627474 | 264 nt | TSL 5 BASIC | -1.05 | □□□□□ -2.58 | | |
| MT1A | P04731 | SNORD114-29-201 | ENST00000364819 | 70 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1175P-201 | ENST00000365200 | 107 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR889-201 | ENST00000401280 | 79 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-855P-201 | ENST00000410395 | 104 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC004866.1-201 | ENST00000411748 | 78 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | MCHR2-AS1-203 | ENST00000451220 | 429 nt | TSL 3 BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU7-104P-201 | ENST00000459398 | 79 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNA5SP20-201 | ENST00000515976 | 84 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU7-172P-201 | ENST00000517125 | 64 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC026470.2-201 | ENST00000561492 | 181 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | MTND5P34-201 | ENST00000568888 | 325 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC079466.2-201 | ENST00000585394 | 185 nt | TSL 5 BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC099785.1-201 | ENST00000605697 | 437 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AF250324.2-201 | ENST00000608299 | 610 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC131235.4-201 | ENST00000609288 | 620 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AL512506.1-201 | ENST00000613918 | 449 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AL049777.1-201 | ENST00000622740 | 518 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | U4.7-201 | ENST00000638126 | 106 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC013437.2-201 | ENST00000639587 | 677 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| MT1A | P04731 | DEFB131A-201 | ENST00000334879 | 213 nt | APPRIS P1 TSL 1 (best) BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | U3.4-201 | ENST00000363352 | 213 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | SNORD114-17-201 | ENST00000364699 | 75 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR217-201 | ENST00000384817 | 110 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR496-201 | ENST00000385226 | 102 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | MT-TF-201 | ENST00000387314 | 71 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU5E-9P-201 | ENST00000411164 | 104 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC022028.1-201 | ENST00000412054 | 408 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC012306.1-201 | ENST00000423267 | 114 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | SNAP23P1-201 | ENST00000433229 | 246 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | RPL39P25-201 | ENST00000449384 | 154 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC092925.1-201 | ENST00000470739 | 493 nt | TSL 3 BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.679-201 | ENST00000516416 | 91 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-175P-201 | ENST00000516896 | 107 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | DEFB131B-201 | ENST00000530210 | 213 nt | APPRIS P1 TSL 1 (best) BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AP003072.1-201 | ENST00000531740 | 145 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC010177.1-201 | ENST00000547819 | 366 nt | TSL 3 BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC138915.2-201 | ENST00000569776 | 97 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR5704-201 | ENST00000584029 | 77 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR548AC-201 | ENST00000585049 | 88 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AP001836.1-201 | ENST00000604675 | 523 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR6082-201 | ENST00000613604 | 109 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | SMAD5-AS1_4.1-201 | ENST00000615561 | 167 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC091948.2-201 | ENST00000636510 | 279 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | Z97988.1-201 | ENST00000637697 | 135 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-252P-201 | ENST00000363232 | 107 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR539-201 | ENST00000365690 | 78 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.426-201 | ENST00000384068 | 113 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1005P-201 | ENST00000384519 | 107 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-376P-201 | ENST00000384731 | 106 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR181B2-201 | ENST00000385004 | 89 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR527-201 | ENST00000385244 | 85 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | RPS29P13-201 | ENST00000402041 | 169 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AL353795.2-201 | ENST00000431804 | 425 nt | TSL 2 BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | EPS15P1-201 | ENST00000448836 | 336 nt | BASIC | -1.08 | □□□□□ -2.58 | | |