Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNU1-22P-201ENST00000363334 158 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 RNU6-899P-201ENST00000363947 107 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 Y_RNA.571-201ENST00000384753 98 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 RNA5SP511-201ENST00000410487 115 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 RNU6-394P-201ENST00000410735 107 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 RNU6-1135P-201ENST00000411083 103 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
LMX1BO60663 AC074290.1-201ENST00000448883 135 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 HMGN2P23-201ENST00000456759 269 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 RPL36AP21-201ENST00000490372 323 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 CKS1BP2-201ENST00000497342 240 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 RNU7-115P-201ENST00000516433 55 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.84□□□□□ -2.11
LMX1BO60663 AC245884.12-201ENST00000615364 59 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 AC012640.5-201ENST00000623897 319 ntBASIC1.84□□□□□ -2.11
LMX1BO60663 AC092881.1-201ENST00000638218 2733 ntBASIC1.84□□□□□ -2.12
LMX1BO60663 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
LMX1BO60663 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
LMX1BO60663 Y_RNA.238-201ENST00000364441 102 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 RNU6-407P-201ENST00000365280 104 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 MIR1278-201ENST00000408753 81 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 RNU2-2P-201ENST00000410396 191 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 AC117454.1-201ENST00000491120 168 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 RNA5SP200-201ENST00000516360 103 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 RNU6-453P-201ENST00000516819 85 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 RNU7-128P-201ENST00000517247 62 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.83□□□□□ -2.12
LMX1BO60663 AC015720.1-201ENST00000565251 277 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 MIR4658-201ENST00000584344 65 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 RNU2-4P-201ENST00000606190 192 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 MIR6840-201ENST00000611937 71 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 AC021753.1-201ENST00000635724 168 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 AC068647.2-201ENST00000637380 353 ntBASIC1.83□□□□□ -2.12
LMX1BO60663 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.83□□□□□ -2.12
LMX1BO60663 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
LMX1BO60663 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
LMX1BO60663 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
LMX1BO60663 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.82□□□□□ -2.12
LMX1BO60663 Y_RNA.7-201ENST00000362352 102 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 RNU6-271P-201ENST00000363858 105 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 RNU1-96P-201ENST00000364163 162 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 RNU6-1164P-201ENST00000364428 107 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 RNA5SP138-201ENST00000365098 114 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 RNU4-17P-201ENST00000365598 141 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 Y_RNA.412-201ENST00000384001 104 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 RNU6-1323P-201ENST00000384025 107 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 Y_RNA.441-201ENST00000384123 112 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 SNORA67.3-201ENST00000384366 140 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 MIR526A2-201ENST00000390198 65 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AL117342.1-201ENST00000404861 406 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 SRIP3-201ENST00000413200 219 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AC008134.1-201ENST00000420943 193 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.82□□□□□ -2.12
LMX1BO60663 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.82□□□□□ -2.12
LMX1BO60663 RNU7-26P-201ENST00000458980 63 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AC090255.1-201ENST00000495779 349 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.82□□□□□ -2.12
LMX1BO60663 SCARNA16.3-201ENST00000516595 184 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AP003357.1-201ENST00000604497 148 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AC022202.1-201ENST00000613515 211 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 MIR548AY-201ENST00000617669 107 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 U4atac.1-201ENST00000618345 95 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 U6.108-201ENST00000637764 58 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 CENPCP1-201ENST00000533085 2578 ntBASIC1.82□□□□□ -2.12
LMX1BO60663 AL596028.1-201ENST00000326971 197 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 Y_RNA.24-201ENST00000362508 103 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 RNU6-774P-201ENST00000363238 107 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 Y_RNA.121-201ENST00000363309 113 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 Y_RNA.170-201ENST00000363746 110 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.81□□□□□ -2.12
LMX1BO60663 Y_RNA.506-201ENST00000384494 102 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 RNU6-125P-201ENST00000384505 107 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 AL023284.1-201ENST00000403956 276 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 RNU6-383P-201ENST00000410864 94 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 AL162725.1-201ENST00000435405 301 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 HMGN2P34-201ENST00000437647 269 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.81□□□□□ -2.12
LMX1BO60663 AC097462.1-201ENST00000514125 324 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 Y_RNA.662-201ENST00000516028 97 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 RNU6-295P-201ENST00000516901 104 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 MTND5P41-201ENST00000517498 206 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.81□□□□□ -2.12
LMX1BO60663 AC127455.1-201ENST00000565496 145 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 AC002984.1-201ENST00000591692 448 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 AC005972.2-201ENST00000604690 348 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 U6.73-201ENST00000619194 103 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 AC022513.1-201ENST00000624512 117 ntBASIC1.81□□□□□ -2.12
LMX1BO60663 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
LMX1BO60663 Y_RNA.75-201ENST00000362927 97 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 Y_RNA.99-201ENST00000363138 105 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 RNU6-1205P-201ENST00000363625 106 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 SNORA33-201ENST00000363664 130 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 Y_RNA.293-201ENST00000364908 93 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 RNU6-804P-201ENST00000384286 107 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 SNORA36B-201ENST00000410438 131 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 AL353689.1-201ENST00000438895 199 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 AC009238.1-201ENST00000442165 424 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 AC009237.6-201ENST00000446969 424 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms