Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 Y_RNA.544-201ENST00000384650 113 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 RNA5SP323-201ENST00000391094 133 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.39□□□□□ -1.87
USP3Q9Y6I4 HMGN1P18-201ENST00000457642 277 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 AL049830.1-201ENST00000468034 425 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 RNA5SP281-201ENST00000516504 135 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 AC004486.1-201ENST00000546846 233 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 MIR3186-201ENST00000577404 85 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 MIR3616-201ENST00000584070 92 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 AC073476.4-201ENST00000628409 72 ntBASIC3.39□□□□□ -1.87
USP3Q9Y6I4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USP3Q9Y6I4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USP3Q9Y6I4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.39□□□□□ -1.87
USP3Q9Y6I4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
USP3Q9Y6I4 SNORD14E-201ENST00000364009 85 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 RNU6-1014P-201ENST00000383940 103 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 RNU6-1189P-201ENST00000383958 107 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 CST9LP2-201ENST00000437612 320 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 RN7SL504P-201ENST00000494496 287 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 RNU1-143P-201ENST00000516296 146 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.38□□□□□ -1.87
USP3Q9Y6I4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.38□□□□□ -1.87
USP3Q9Y6I4 MIR4762-201ENST00000585261 75 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 AL161756.2-201ENST00000604597 246 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 U1.23-201ENST00000610293 146 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 RNU1-68P-201ENST00000615382 146 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 MIR8057-201ENST00000620957 69 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 U1.39-201ENST00000621562 146 ntBASIC3.38□□□□□ -1.87
USP3Q9Y6I4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP3Q9Y6I4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.38□□□□□ -1.87
USP3Q9Y6I4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
USP3Q9Y6I4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 ZNF720P1-201ENST00000562403 1939 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 SNORA38.1-201ENST00000364172 131 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 U8.5-201ENST00000364528 136 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 Y_RNA.348-201ENST00000365403 103 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 RNU6-905P-201ENST00000384434 107 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 RNA5SP467-201ENST00000391274 118 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 MIR548O-201ENST00000408583 114 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 CST2P1-201ENST00000425770 87 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 ATP5J2P3-201ENST00000451550 258 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 RNU6-1041P-201ENST00000516254 102 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 RNU7-70P-201ENST00000516941 66 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 RNU6-844P-201ENST00000517175 102 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 RN7SKP57-201ENST00000517248 293 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 AP001318.4-201ENST00000616637 121 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 U6.108-201ENST00000637764 58 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 PWAR6-201ENST00000552334 4618 ntBASIC3.37□□□□□ -1.87
USP3Q9Y6I4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP3Q9Y6I4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP3Q9Y6I4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.36□□□□□ -1.87
USP3Q9Y6I4 SNORA26.7-201ENST00000391288 122 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 SNORA11.1-201ENST00000408133 129 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 RN7SL442P-201ENST00000473804 320 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 RPL39P34-201ENST00000477141 156 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 SNORA40.13-201ENST00000516379 120 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 RNU6-667P-201ENST00000517186 102 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 IGKV3-31-201ENST00000523109 329 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 AC007536.1-201ENST00000533382 349 ntBASIC3.36□□□□□ -1.87
USP3Q9Y6I4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.36□□□□□ -1.87
USP3Q9Y6I4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
USP3Q9Y6I4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.36□□□□□ -1.87
USP3Q9Y6I4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.36□□□□□ -1.87
USP3Q9Y6I4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
USP3Q9Y6I4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.35□□□□□ -1.87
USP3Q9Y6I4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
USP3Q9Y6I4 SNORA1B-201ENST00000362535 133 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 SNORA2.2-201ENST00000365473 135 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 SNORA7.4-201ENST00000384249 137 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 RNU6-160P-201ENST00000384591 107 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 MIR592-201ENST00000384959 97 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 AL117342.1-201ENST00000404861 406 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.35□□□□□ -1.87
USP3Q9Y6I4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.35□□□□□ -1.87
USP3Q9Y6I4 RNU6-240P-201ENST00000516098 97 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 uc_338.25-201ENST00000613756 156 ntBASIC3.35□□□□□ -1.87
USP3Q9Y6I4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.35□□□□□ -1.87
USP3Q9Y6I4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
USP3Q9Y6I4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
USP3Q9Y6I4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
USP3Q9Y6I4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP3Q9Y6I4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
USP3Q9Y6I4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP3Q9Y6I4 RNU6-640P-201ENST00000363693 105 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 SNORD115-28-201ENST00000363931 81 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 snoU2-30.1-201ENST00000365012 70 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 RNU6-690P-201ENST00000365242 106 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 Y_RNA.336-201ENST00000365307 109 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 SNORA8-201ENST00000384574 139 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 Y_RNA.549-201ENST00000384657 102 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms