Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC023449.1-201ENST00000454464 154 ntBASIC3.6□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-1096P-201ENST00000517089 102 ntBASIC3.6□□□□□ -1.83
CHMP3Q9Y3E7 SCARNA3-201ENST00000517097 143 ntBASIC3.6□□□□□ -1.83
CHMP3Q9Y3E7 AC007751.1-201ENST00000529260 376 ntBASIC3.6□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-851P-201ENST00000384565 107 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AL603914.1-201ENST00000401964 204 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AC063976.4-201ENST00000421971 163 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AC063976.3-201ENST00000426849 329 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AC087499.2-201ENST00000432861 149 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AC105272.1-201ENST00000438604 198 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AC009969.1-201ENST00000438726 172 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 UQCRHP3-201ENST00000451503 251 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 RN7SKP132-201ENST00000516001 208 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AL670379.3-201ENST00000605040 251 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 U2.20-201ENST00000613956 192 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 AC080128.1-201ENST00000474389 1917 ntBASIC3.59□□□□□ -1.83
CHMP3Q9Y3E7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.59□□□□□ -1.84
CHMP3Q9Y3E7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CHMP3Q9Y3E7 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 Y_RNA.66-201ENST00000362862 102 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 FO393413.1-201ENST00000402892 195 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 U6atac.2-201ENST00000408644 118 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 Y_RNA.617-201ENST00000410920 90 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 AC060773.1-201ENST00000421698 310 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 MICF-203ENST00000432679 129 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 RPS26P45-201ENST00000471748 340 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 UBE2DNL-203ENST00000474922 222 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 NDUFA4P2-201ENST00000489989 244 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 OR9P1P-201ENST00000496431 281 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 AC093259.1-201ENST00000509755 300 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 RNU6-56P-201ENST00000516986 93 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 AC073413.2-201ENST00000604332 360 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 U6.73-201ENST00000619194 103 ntBASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.58□□□□□ -1.84
CHMP3Q9Y3E7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 Y_RNA.35-201ENST00000362601 101 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 RNU6-1138P-201ENST00000365359 106 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 SNORD18B-201ENST00000365659 72 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 Y_RNA.621-201ENST00000411065 96 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 AC244505.4-201ENST00000434905 287 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 HMGN2P34-201ENST00000437647 269 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 SSXP5-201ENST00000443473 287 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 RPS29P21-201ENST00000496272 170 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 RNA5SP356-201ENST00000515972 94 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 SNORA18.4-201ENST00000516440 124 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 RNU6-856P-201ENST00000516959 98 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 SNORA31.26-201ENST00000517250 137 ntBASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHMP3Q9Y3E7 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 SNORA1-201ENST00000384107 130 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 MIR1253-201ENST00000408273 105 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 RNU6-1186P-201ENST00000410429 97 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 RNU2-48P-201ENST00000410694 191 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 AC123900.1-201ENST00000420390 96 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 Y_RNA.651-201ENST00000459380 103 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 RNU1-104P-201ENST00000517280 175 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 ELOCP29-201ENST00000588193 334 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 JPX_2.1-201ENST00000614161 69 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 AL161431.1-201ENST00000618966 4205 ntBASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHMP3Q9Y3E7 RNA5SP139-201ENST00000364340 117 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 Y_RNA.332-201ENST00000365271 113 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 SNORD116-21-201ENST00000384507 92 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 MIR548A3-201ENST00000385297 97 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 AL161788.1-201ENST00000441805 169 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 RNA5SP170-201ENST00000517150 101 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 IGKV1-22-201ENST00000524313 326 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 MIR3129-201ENST00000581095 76 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 AC091178.2-201ENST00000584401 117 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 AL022345.2-201ENST00000606307 135 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 MIR7157-201ENST00000635801 60 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 MAPK10-266ENST00000641066 6555 ntBASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
CHMP3Q9Y3E7 Y_RNA.43-201ENST00000362670 111 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 RNU6-647P-201ENST00000364243 107 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 MIR548A1-201ENST00000385041 97 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 MIR624-201ENST00000385217 97 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 SNORA12.1-201ENST00000390873 148 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 MIR891A-201ENST00000401237 79 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 RNA5SP127-201ENST00000411051 133 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 MRPS17P9-201ENST00000511924 393 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 SNORA4.4-201ENST00000515921 135 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 RNU7-128P-201ENST00000517247 62 ntBASIC3.54□□□□□ -1.84
CHMP3Q9Y3E7 AC079600.2-201ENST00000550076 130 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms