Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RNU6-1199P-201ENST00000411249 104 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 AC245047.3-201ENST00000429428 127 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 AL731563.1-201ENST00000442202 214 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 RNU7-34P-201ENST00000459394 64 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 RNU7-94P-201ENST00000459576 63 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 AC005908.1-201ENST00000468701 347 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 RPS26P55-201ENST00000471178 356 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 MIR376A1-201ENST00000616574 68 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 AC018630.2-201ENST00000534866 2403 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.47-201ENST00000362697 108 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.286-201ENST00000364813 102 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 RNU6-574P-201ENST00000384265 107 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.462-201ENST00000384268 102 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 RNU6-472P-201ENST00000384299 107 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 RNU6-950P-201ENST00000384651 107 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 RNY3P15-201ENST00000516297 97 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 AC100821.1-201ENST00000523153 2479 ntBASIC1.75□□□□□ -2.13
LIMA1Q9UHB6 SNORD81.1-201ENST00000363064 77 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 RNU6-238P-201ENST00000363313 106 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.152-201ENST00000363578 100 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 RNU6-1175P-201ENST00000365200 107 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.446-201ENST00000384178 104 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 RNU4-30P-201ENST00000410245 143 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 HSPE1P25-201ENST00000455484 251 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 RNU6-1278P-201ENST00000516130 107 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 RNU6-155P-201ENST00000516347 100 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 SNORA40.15-201ENST00000516884 107 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.713-201ENST00000517013 96 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 AP003733.2-201ENST00000529409 171 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 RPL21P9-201ENST00000556149 474 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 SNORA77B-201ENST00000578179 125 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 AL929325.1-201ENST00000603096 117 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 AC022441.3-201ENST00000605737 136 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 MIR8081-201ENST00000611533 95 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 MIR8054-201ENST00000620877 86 ntBASIC1.74□□□□□ -2.13
LIMA1Q9UHB6 SNORD113-8-201ENST00000363497 74 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.396-201ENST00000383949 103 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 RNU6-376P-201ENST00000384731 106 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 MT-TW-201ENST00000387382 68 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.581-201ENST00000391017 97 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 RNU11-5P-201ENST00000391216 129 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 AL031003.1-201ENST00000404229 172 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 SNORA11.2-201ENST00000408318 127 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 AC010154.1-201ENST00000425857 269 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 snoU13.9-201ENST00000458927 103 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 SNORA70.12-201ENST00000516084 153 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 RNU6-496P-201ENST00000516145 99 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 SNORA31.10-201ENST00000516482 106 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 AL161670.1-201ENST00000554348 137 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 MIR6845-201ENST00000613182 61 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 MIR8062-201ENST00000621515 85 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 AC127459.3-201ENST00000624328 466 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 AC095038.3-201ENST00000634439 195 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 MIR6079-201ENST00000635807 62 ntBASIC1.73□□□□□ -2.13
LIMA1Q9UHB6 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.149-201ENST00000363558 117 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.176-201ENST00000363815 109 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 RNU6-117P-201ENST00000365415 107 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 RNU6-203P-201ENST00000384038 104 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.483-201ENST00000384380 101 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 RNU6-505P-201ENST00000384427 107 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.541-201ENST00000384640 113 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 MIR320A-201ENST00000385302 82 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 MIR4503-201ENST00000582187 83 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.72□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.84-201ENST00000363011 104 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 Y_RNA.144-201ENST00000363521 113 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 Y_RNA.376-201ENST00000365638 108 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 RNU6-338P-201ENST00000383888 105 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 MIR934-201ENST00000401241 83 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 Y_RNA.602-201ENST00000410535 92 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 RNU5A-5P-201ENST00000411054 116 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 AL161935.2-201ENST00000414627 60 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 AC091021.1-201ENST00000468051 388 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 AC099513.1-201ENST00000490423 301 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 DEFB122-202ENST00000569013 197 ntBASIC1.71□□□□□ -2.14
LIMA1Q9UHB6 Y_RNA.16-201ENST00000362421 102 ntBASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 RNU6-324P-201ENST00000363957 106 ntBASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 Y_RNA.518-201ENST00000384552 113 ntBASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 RNU6-1031P-201ENST00000384773 107 ntBASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 RNU6-440P-201ENST00000390882 105 ntBASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 AL627390.1-201ENST00000396055 340 ntBASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 RN7SKP200-201ENST00000410564 320 ntBASIC1.7□□□□□ -2.14
LIMA1Q9UHB6 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms