Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 Y_RNA.163-201ENST00000363702 113 ntBASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 RNU6-690P-201ENST00000365242 106 ntBASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 RN7SL297P-201ENST00000483161 293 ntBASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 RN7SL504P-201ENST00000494496 287 ntBASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 AC009831.4-201ENST00000620744 325 ntBASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 AC244205.2-202ENST00000635781 342 ntBASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 RNA5SP374-201ENST00000362939 125 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 SNORA33-201ENST00000363664 130 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 Y_RNA.510-201ENST00000384511 114 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 SNORA11.4-201ENST00000408823 129 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 AC010401.1-201ENST00000463867 348 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 AC091826.1-201ENST00000514065 313 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 EIF4BP1-201ENST00000554881 351 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 MIR4778-201ENST00000577635 80 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMD1Q9UGP4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 Y_RNA.37-201ENST00000362606 108 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 RNU6-268P-201ENST00000364174 107 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 RNU6-756P-201ENST00000383997 107 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 TRBV12-2-201ENST00000489763 344 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 RNU7-25P-201ENST00000516544 62 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 MIR5680-201ENST00000577577 84 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 MIR4325-201ENST00000583049 90 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 AC006386.2-201ENST00000624491 75 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 AC012005.1-201ENST00000624575 75 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 MIR376A2-201ENST00000636782 80 ntBASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
LIMD1Q9UGP4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 MIR423-201ENST00000362201 94 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 RNU6-862P-201ENST00000362804 105 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 RPL21P3-201ENST00000395517 478 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 AL445646.1-201ENST00000431784 216 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 AC087499.4-201ENST00000448505 178 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 RNU7-80P-201ENST00000459562 61 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 RN7SKP83-201ENST00000516512 178 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 SNORD45.4-201ENST00000516629 73 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 IGKV2-26-201ENST00000518305 343 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 RNU6-94P-201ENST00000607728 107 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 MAPK10-362ENST00000641864 4484 ntBASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.67□□□□□ -1.82
LIMD1Q9UGP4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 MFSD8-233ENST00000641482 4860 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 Y_RNA.265-201ENST00000364677 108 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 RNU1-133P-201ENST00000364867 167 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 Y_RNA.323-201ENST00000365157 109 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 Y_RNA.328-201ENST00000365208 113 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 Y_RNA.454-201ENST00000384224 113 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 Y_RNA.547-201ENST00000384654 119 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 RNY4P30-201ENST00000410216 95 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 COTL1P1-201ENST00000422309 375 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 SNRPGP14-201ENST00000435400 219 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 S100A11P2-201ENST00000467589 312 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 AC026271.5-201ENST00000577873 130 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 AL162274.2-201ENST00000614406 332 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LIMD1Q9UGP4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
LIMD1Q9UGP4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
LIMD1Q9UGP4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
LIMD1Q9UGP4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.65□□□□□ -1.82
LIMD1Q9UGP4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
LIMD1Q9UGP4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 RNU6-1014P-201ENST00000383940 103 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 SNORA51.5-201ENST00000384126 131 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 RNY1P6-201ENST00000384193 109 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 SNORA80E-201ENST00000384744 137 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 AL138878.1-201ENST00000405131 347 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 MIR1262-201ENST00000408276 93 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 RHEBP3-201ENST00000411920 351 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 AC245047.3-201ENST00000429428 127 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 TRBV12-1-201ENST00000479785 344 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 RNA5SP281-201ENST00000516504 135 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 RNY4P20-201ENST00000516678 93 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 IGKV3-31-201ENST00000523109 329 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 AC021443.1-201ENST00000604478 211 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 AC092435.3-201ENST00000565538 3654 ntBASIC3.65□□□□□ -1.83
LIMD1Q9UGP4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 RNU6-349P-201ENST00000362402 107 ntBASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 RNA5SP493-201ENST00000364115 91 ntBASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 Y_RNA.549-201ENST00000384657 102 ntBASIC3.64□□□□□ -1.83
LIMD1Q9UGP4 MIR1302-4-201ENST00000408701 150 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms