Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC092881.1-201ENST00000638218 2733 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 Y_RNA.267-201ENST00000364679 109 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 RNA5SP160-201ENST00000364866 120 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 MIR520A-201ENST00000384862 85 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AL512604.1-201ENST00000404812 257 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AL355497.1-201ENST00000406262 551 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 RNA5SP511-201ENST00000410487 115 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 RNU2-38P-201ENST00000410856 79 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AC233266.1-201ENST00000454518 96 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.32□□□□□ -2.04
NUP88Q99567 HMGN2P23-201ENST00000456759 269 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 RNU7-94P-201ENST00000459576 63 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.32□□□□□ -2.04
NUP88Q99567 RNU6-295P-201ENST00000516901 104 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.32□□□□□ -2.04
NUP88Q99567 AC002984.1-201ENST00000591692 448 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.32□□□□□ -2.04
NUP88Q99567 AC242852.1-201ENST00000612151 96 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AC244015.1-201ENST00000622301 99 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AC068647.2-201ENST00000637380 353 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 AC008555.8-201ENST00000623602 2168 ntBASIC2.32□□□□□ -2.04
NUP88Q99567 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
NUP88Q99567 AL596028.1-201ENST00000326971 197 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 Y_RNA.54-201ENST00000362766 105 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 Y_RNA.452-201ENST00000384202 108 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 Y_RNA.456-201ENST00000384232 111 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 Y_RNA.621-201ENST00000411065 96 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 AC245047.4-201ENST00000433189 144 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 AC003989.2-201ENST00000440224 169 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 RPS20P10-201ENST00000451209 253 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 RNU7-128P-201ENST00000517247 62 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 AC110588.1-201ENST00000559699 137 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 U6.108-201ENST00000637764 58 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 AC018630.2-201ENST00000534866 2403 ntBASIC2.31□□□□□ -2.04
NUP88Q99567 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
NUP88Q99567 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.3□□□□□ -2.04
NUP88Q99567 Y_RNA.172-201ENST00000363765 102 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 RNA5SP109-201ENST00000391010 116 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 SNORA40.18-201ENST00000391200 128 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 RNA5SP338-201ENST00000410495 85 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 AL158823.1-201ENST00000418441 478 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.3□□□□□ -2.04
NUP88Q99567 RPL23AP6-201ENST00000446637 472 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 AC091021.1-201ENST00000468051 388 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 SUB1P4-201ENST00000566062 339 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 AC004832.4-201ENST00000608952 331 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.3□□□□□ -2.04
NUP88Q99567 MIR6079-201ENST00000635807 62 ntBASIC2.3□□□□□ -2.04
NUP88Q99567 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
NUP88Q99567 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
NUP88Q99567 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
NUP88Q99567 Y_RNA.44-201ENST00000362676 108 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 RNA5SP138-201ENST00000365098 114 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 RNU6-117P-201ENST00000365415 107 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 Y_RNA.368-201ENST00000365547 113 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 RNU6-662P-201ENST00000384253 104 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 MIR17-201ENST00000385012 84 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 AC245047.3-201ENST00000429428 127 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.29□□□□□ -2.04
NUP88Q99567 RPL39P38-201ENST00000467018 153 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 RNU6-1291P-201ENST00000516591 104 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 RNU6-548P-201ENST00000517083 115 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 RNU6-1096P-201ENST00000517089 102 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 MIR6840-201ENST00000611937 71 ntBASIC2.29□□□□□ -2.04
NUP88Q99567 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
NUP88Q99567 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
NUP88Q99567 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.29□□□□□ -2.04
NUP88Q99567 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
NUP88Q99567 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
NUP88Q99567 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.28□□□□□ -2.04
NUP88Q99567 MIR335-201ENST00000362173 94 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 RNU6-112P-201ENST00000363599 104 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 MIR520G-201ENST00000385064 90 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 AL162725.1-201ENST00000435405 301 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 SNORD127-201ENST00000458892 86 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 RNU6-1132P-201ENST00000459214 107 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 RPL23AP42-201ENST00000471152 471 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 RPS26P45-201ENST00000471748 340 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 RPL23AP63-201ENST00000498752 471 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 RNU2-56P-201ENST00000516826 190 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 AC015720.1-201ENST00000565251 277 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 AC012433.1-201ENST00000588916 398 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 AC005972.2-201ENST00000604690 348 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 AC062037.2-201ENST00000610137 73 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 U2.14-201ENST00000615943 113 ntBASIC2.28□□□□□ -2.04
NUP88Q99567 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
NUP88Q99567 Y_RNA.193-201ENST00000363979 102 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 Y_RNA.310-201ENST00000365063 113 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 MIR562-201ENST00000384894 95 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 RNA5SP212-201ENST00000391223 107 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 MTCO2P33-201ENST00000402100 465 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 RNA5SP100-201ENST00000410903 110 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 RNA5SP59-201ENST00000410922 110 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 BTF3P11-201ENST00000426582 477 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.27□□□□□ -2.05
NUP88Q99567 AC079804.2-201ENST00000490376 200 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 SNORA27.4-201ENST00000516650 95 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 207.6 ms