Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC104027.1-201ENST00000521887 300 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC140Q96MF4 MIR5195-201ENST00000583555 115 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC140Q96MF4 AC073476.4-201ENST00000628409 72 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
CCDC140Q96MF4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC140Q96MF4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CCDC140Q96MF4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC140Q96MF4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC140Q96MF4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 SNORA3A-201ENST00000364113 130 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 RNU6-959P-201ENST00000384671 107 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 Y_RNA.584-201ENST00000391090 114 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 RNA5SP465-201ENST00000391195 109 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 RNA5SP482-201ENST00000391269 118 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 MIR548I2-201ENST00000408348 149 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CCDC140Q96MF4 AC115115.1-201ENST00000449927 248 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 SNORA74D-201ENST00000516404 141 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 RNU6-126P-201ENST00000516685 103 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 RNU6-971P-201ENST00000516920 106 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 RNU6-1270P-201ENST00000517128 108 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 YPEL5P2-201ENST00000605553 359 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 AC011603.4-201ENST00000611325 277 ntBASIC2.51□□□□□ -2.01
CCDC140Q96MF4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC140Q96MF4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 SNORD61-201ENST00000384252 73 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 RNU6-1117P-201ENST00000384525 104 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 RNA5SP501-201ENST00000410990 112 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 RN7SL442P-201ENST00000473804 320 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 RNU6-693P-201ENST00000516134 107 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 RNU1-143P-201ENST00000516296 146 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 SNORA18.4-201ENST00000516440 124 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 SNORA31.10-201ENST00000516482 106 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 AC091544.4-201ENST00000555268 342 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 MIR2682-201ENST00000580305 110 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 MIR3129-201ENST00000581095 76 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 U1.23-201ENST00000610293 146 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 RNU1-68P-201ENST00000615382 146 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 U1.39-201ENST00000621562 146 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 MIR7153-201ENST00000637758 57 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.5□□□□□ -2.01
CCDC140Q96MF4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC140Q96MF4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 SNORD56.3-201ENST00000363507 71 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 SNORD14E-201ENST00000364009 85 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 RNA5SP267-201ENST00000364893 126 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 SNORA4.2-201ENST00000365313 147 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 HSPE1P9-201ENST00000440046 311 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 SNORD45.4-201ENST00000516629 73 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 SNORA64.4-201ENST00000516632 81 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 RNU7-28P-201ENST00000516759 62 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 RNU6-1116P-201ENST00000517269 99 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 RNU1-104P-201ENST00000517280 175 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 AP001328.1-201ENST00000528550 176 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 MIR3200-201ENST00000580767 85 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 AC087685.1-201ENST00000587507 141 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 AC005000.2-201ENST00000605468 310 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 uc_338.25-201ENST00000613756 156 ntBASIC2.49□□□□□ -2.01
CCDC140Q96MF4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC140Q96MF4 Y_RNA.66-201ENST00000362862 102 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 Y_RNA.251-201ENST00000364551 99 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 snoU2-30.1-201ENST00000365012 70 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 SNORD113-1-201ENST00000365321 69 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 SNORA1-201ENST00000384107 130 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 RNU1-52P-201ENST00000384190 164 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 AC005326.1-201ENST00000429197 123 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 AC069257.2-201ENST00000441819 155 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 RPS27P29-201ENST00000463110 252 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 RNU7-193P-201ENST00000516723 65 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 AC097639.2-201ENST00000603159 172 ntBASIC2.48□□□□□ -2.01
CCDC140Q96MF4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC140Q96MF4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC140Q96MF4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC140Q96MF4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC140Q96MF4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
CCDC140Q96MF4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.47□□□□□ -2.01
CCDC140Q96MF4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.47□□□□□ -2.01
CCDC140Q96MF4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC140Q96MF4 Y_RNA.291-201ENST00000364886 113 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CCDC140Q96MF4 SNORA48.1-201ENST00000390879 135 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 MIR887-201ENST00000401258 79 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 RN7SKP200-201ENST00000410564 320 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms