Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 RNA5SP112-201ENST00000515937 99 ntBASIC4.03□□□□□ -1.76
LRCH3Q96II8 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LRCH3Q96II8 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
LRCH3Q96II8 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.03□□□□□ -1.76
LRCH3Q96II8 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LRCH3Q96II8 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
LRCH3Q96II8 RNU4-35P-201ENST00000362588 141 ntBASIC4.02□□□□□ -1.77
LRCH3Q96II8 RNU6-1229P-201ENST00000364295 107 ntBASIC4.02□□□□□ -1.77
LRCH3Q96II8 AC087499.4-201ENST00000448505 178 ntBASIC4.02□□□□□ -1.77
LRCH3Q96II8 AL049830.1-201ENST00000468034 425 ntBASIC4.02□□□□□ -1.77
LRCH3Q96II8 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC4.02□□□□□ -1.77
LRCH3Q96II8 VWA8P1-201ENST00000510889 176 ntBASIC4.02□□□□□ -1.77
LRCH3Q96II8 SNORA31.4-201ENST00000516049 129 ntBASIC4.02□□□□□ -1.77
LRCH3Q96II8 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.02□□□□□ -1.77
LRCH3Q96II8 AF117829.1-206ENST00000621883 3802 ntBASIC4.02□□□□□ -1.77
LRCH3Q96II8 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LRCH3Q96II8 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LRCH3Q96II8 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LRCH3Q96II8 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LRCH3Q96II8 RNU6-633P-201ENST00000362612 103 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 snoU2-30.2-201ENST00000362805 70 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 SNORD68-201ENST00000363214 84 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
LRCH3Q96II8 Y_RNA.430-201ENST00000384081 110 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 AL627390.1-201ENST00000396055 340 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 AL035398.1-201ENST00000430869 322 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 SNORA70.18-201ENST00000516696 98 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 MIR5680-201ENST00000577577 84 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 MIR4712-201ENST00000583750 82 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 MIR4727-201ENST00000622232 55 ntBASIC4.01□□□□□ -1.77
LRCH3Q96II8 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LRCH3Q96II8 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LRCH3Q96II8 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.01□□□□□ -1.77
LRCH3Q96II8 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LRCH3Q96II8 RNU6-616P-201ENST00000384353 107 ntBASIC4□□□□□ -1.77
LRCH3Q96II8 RNA5SP467-201ENST00000391274 118 ntBASIC4□□□□□ -1.77
LRCH3Q96II8 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4□□□□□ -1.77
LRCH3Q96II8 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4□□□□□ -1.77
LRCH3Q96II8 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4□□□□□ -1.77
LRCH3Q96II8 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
LRCH3Q96II8 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4□□□□□ -1.77
LRCH3Q96II8 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.99□□□□□ -1.77
LRCH3Q96II8 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.99□□□□□ -1.77
LRCH3Q96II8 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
LRCH3Q96II8 MIR340-201ENST00000362125 95 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 RNU6-1084P-201ENST00000362498 107 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 Y_RNA.299-201ENST00000364973 94 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
LRCH3Q96II8 RNA5SP164-201ENST00000516533 110 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 AP002004.2-201ENST00000531656 154 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.99□□□□□ -1.77
LRCH3Q96II8 MIR4439-201ENST00000583746 80 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 MIR4762-201ENST00000585261 75 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 AC021613.1-201ENST00000623880 111 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 U6.108-201ENST00000637764 58 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LRCH3Q96II8 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LRCH3Q96II8 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.99□□□□□ -1.77
LRCH3Q96II8 ICE2P2-201ENST00000483823 2787 ntBASIC3.99□□□□□ -1.77
LRCH3Q96II8 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.99□□□□□ -1.77
LRCH3Q96II8 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LRCH3Q96II8 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.98□□□□□ -1.77
LRCH3Q96II8 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LRCH3Q96II8 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRCH3Q96II8 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
LRCH3Q96II8 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRCH3Q96II8 snoU2-30.1-201ENST00000365012 70 ntBASIC3.98□□□□□ -1.77
LRCH3Q96II8 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
LRCH3Q96II8 POLR2J4-204ENST00000418424 324 ntBASIC3.98□□□□□ -1.77
LRCH3Q96II8 AC123900.1-201ENST00000420390 96 ntBASIC3.98□□□□□ -1.77
LRCH3Q96II8 AC107083.1-201ENST00000439643 279 ntBASIC3.98□□□□□ -1.77
LRCH3Q96II8 SNORA31.21-201ENST00000517180 77 ntBASIC3.98□□□□□ -1.77
LRCH3Q96II8 AC096720.1-201ENST00000604441 183 ntBASIC3.98□□□□□ -1.77
LRCH3Q96II8 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.98□□□□□ -1.77
LRCH3Q96II8 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRCH3Q96II8 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.98□□□□□ -1.77
LRCH3Q96II8 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.97□□□□□ -1.77
LRCH3Q96II8 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LRCH3Q96II8 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
LRCH3Q96II8 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
LRCH3Q96II8 RNA5SP252-201ENST00000391131 119 ntBASIC3.97□□□□□ -1.77
LRCH3Q96II8 RNA5SP38-201ENST00000410750 119 ntBASIC3.97□□□□□ -1.77
LRCH3Q96II8 AL137790.1-201ENST00000634283 177 ntBASIC3.97□□□□□ -1.77
LRCH3Q96II8 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LRCH3Q96II8 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LRCH3Q96II8 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.97□□□□□ -1.77
LRCH3Q96II8 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LRCH3Q96II8 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.97□□□□□ -1.77
LRCH3Q96II8 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
LRCH3Q96II8 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
LRCH3Q96II8 AC008264.2-201ENST00000610193 3731 ntBASIC3.96□□□□□ -1.77
LRCH3Q96II8 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LRCH3Q96II8 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.96□□□□□ -1.78
LRCH3Q96II8 RNU6-1313P-201ENST00000362622 102 ntBASIC3.96□□□□□ -1.78
LRCH3Q96II8 U8.5-201ENST00000364528 136 ntBASIC3.96□□□□□ -1.78
LRCH3Q96II8 MIR199A2-201ENST00000385289 110 ntBASIC3.96□□□□□ -1.78
LRCH3Q96II8 AC083863.1-201ENST00000438811 231 ntBASIC3.96□□□□□ -1.78
LRCH3Q96II8 SNORD45.4-201ENST00000516629 73 ntBASIC3.96□□□□□ -1.78
LRCH3Q96II8 AC103810.7-201ENST00000607821 91 ntBASIC3.96□□□□□ -1.78
LRCH3Q96II8 AL512310.12-203ENST00000640543 90 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 163.6 ms