Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AL008636.1-201ENST00000625038 1018 ntBASIC1.41□□□□□ -2.18
KRT39Q6A163 SNORD3E-202ENST00000627253 216 ntBASIC1.41□□□□□ -2.18
KRT39Q6A163 AL606534.2-204ENST00000635008 178 ntBASIC1.41□□□□□ -2.18
KRT39Q6A163 Y_RNA.230-201ENST00000364348 109 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 SNORD116-13-201ENST00000384408 92 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 RNY1P14-201ENST00000384426 108 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 RNU6-1065P-201ENST00000384513 106 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 RNU6-136P-201ENST00000384663 107 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 Y_RNA.570-201ENST00000384750 101 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 MIR562-201ENST00000384894 95 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 RNA5SP511-201ENST00000410487 115 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 AL354751.2-201ENST00000415471 210 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 SNX2P2-201ENST00000424553 323 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 HSPE1P13-201ENST00000451143 297 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 AC004223.1-201ENST00000479840 271 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 RNU6-155P-201ENST00000516347 100 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 RNA5SP168-201ENST00000516642 112 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 MIR4778-201ENST00000577635 80 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 AC010205.1-201ENST00000616668 449 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.4□□□□□ -2.19
KRT39Q6A163 Y_RNA.172-201ENST00000363765 102 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 Y_RNA.197-201ENST00000364004 102 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 Y_RNA.265-201ENST00000364677 108 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 SNORD26-201ENST00000384147 75 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 Y_RNA.509-201ENST00000384506 99 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 SNORA40.6-201ENST00000391153 128 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 U8.16-201ENST00000391279 133 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 BTF3P4-201ENST00000418852 495 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.39□□□□□ -2.19
KRT39Q6A163 AL162725.1-201ENST00000435405 301 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 RPEP5-201ENST00000441137 268 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 AC009474.2-201ENST00000451383 136 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 SNORA70.12-201ENST00000516084 153 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 RNU6-436P-201ENST00000516171 114 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.39□□□□□ -2.19
KRT39Q6A163 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.39□□□□□ -2.19
KRT39Q6A163 MIR3660-201ENST00000584845 100 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 AP000942.3-201ENST00000603702 160 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 AL080274.1-201ENST00000605565 220 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.39□□□□□ -2.19
KRT39Q6A163 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.38□□□□□ -2.19
KRT39Q6A163 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
KRT39Q6A163 MIRLET7C-201ENST00000362160 84 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 Y_RNA.80-201ENST00000362996 102 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 Y_RNA.112-201ENST00000363250 102 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 SNORA7.1-201ENST00000363750 139 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 Y_RNA.485-201ENST00000384395 102 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 AP1B1P2-201ENST00000416196 106 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 AL160004.2-201ENST00000432935 350 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 RPS4XP11-201ENST00000446897 772 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 RPS29P29-201ENST00000456396 171 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 RPL39P38-201ENST00000467018 153 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 SNORA40.14-201ENST00000516543 86 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 RNU7-28P-201ENST00000516759 62 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.38□□□□□ -2.19
KRT39Q6A163 CYP3A52P-201ENST00000563326 91 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 C8orf59P2-201ENST00000603441 271 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 AL138825.1-201ENST00000618587 192 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 AC106754.2-201ENST00000623006 233 ntBASIC1.38□□□□□ -2.19
KRT39Q6A163 RNU6-1175P-201ENST00000365200 107 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 Y_RNA.395-201ENST00000383945 109 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 Y_RNA.458-201ENST00000384240 102 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 MTND1P14-201ENST00000427400 950 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 RPS29P23-201ENST00000458635 123 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 RPL30P7-201ENST00000479312 323 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 RN7SKP295-201ENST00000517264 153 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 AL358944.1-201ENST00000528537 144 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 AL160236.1-201ENST00000556317 195 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 AC004832.4-201ENST00000608952 331 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 AC007485.1-201ENST00000616755 206 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 uc_338.22-201ENST00000622722 187 ntBASIC1.37□□□□□ -2.19
KRT39Q6A163 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.37□□□□□ -2.19
KRT39Q6A163 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
KRT39Q6A163 RNU6-324P-201ENST00000363957 106 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 RNU4-41P-201ENST00000364426 143 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 SNORD42.2-201ENST00000365570 69 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 Y_RNA.419-201ENST00000384041 102 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 RNA5SP482-201ENST00000391269 118 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.36□□□□□ -2.19
KRT39Q6A163 RPL30P13-201ENST00000418873 348 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.36□□□□□ -2.19
KRT39Q6A163 AC015922.2-201ENST00000435593 184 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 Z98949.2-201ENST00000440996 144 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 AC233266.1-201ENST00000454518 96 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 AL163540.1-201ENST00000485382 386 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 RNU6-165P-201ENST00000517170 99 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 MIR3664-201ENST00000579074 99 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 AL121655.1-201ENST00000605811 308 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 AC006157.1-201ENST00000611750 366 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 AC242852.1-201ENST00000612151 96 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 AC244015.1-201ENST00000622301 99 ntBASIC1.36□□□□□ -2.19
KRT39Q6A163 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
KRT39Q6A163 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
KRT39Q6A163 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
KRT39Q6A163 MIR378A-201ENST00000362177 66 ntBASIC1.35□□□□□ -2.19
KRT39Q6A163 RNU6-797P-201ENST00000363101 109 ntBASIC1.35□□□□□ -2.19
KRT39Q6A163 RNU4-76P-201ENST00000364509 141 ntBASIC1.35□□□□□ -2.19
KRT39Q6A163 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 251.6 ms