Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNA5SP236-201ENST00000516169 116 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 Y_RNA.677-201ENST00000516401 85 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 RNU6-412P-201ENST00000516434 106 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 RNU6-537P-201ENST00000517277 103 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 MIR7106-201ENST00000612419 65 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 AC080128.1-201ENST00000474389 1917 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
SOX4Q06945 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SOX4Q06945 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.14□□□□□ -1.91
SOX4Q06945 RNA5SP383-201ENST00000362934 120 ntBASIC3.14□□□□□ -1.91
SOX4Q06945 Y_RNA.369-201ENST00000365568 117 ntBASIC3.14□□□□□ -1.91
SOX4Q06945 RNU6-1292P-201ENST00000383856 107 ntBASIC3.14□□□□□ -1.91
SOX4Q06945 SNORD61-201ENST00000384252 73 ntBASIC3.14□□□□□ -1.91
SOX4Q06945 RNY4P30-201ENST00000410216 95 ntBASIC3.14□□□□□ -1.91
SOX4Q06945 AC009969.1-201ENST00000438726 172 ntBASIC3.14□□□□□ -1.91
SOX4Q06945 AC073413.2-201ENST00000604332 360 ntBASIC3.14□□□□□ -1.91
SOX4Q06945 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.14□□□□□ -1.91
SOX4Q06945 RNU1-96P-201ENST00000364163 162 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 Y_RNA.281-201ENST00000364774 94 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 AC123900.1-201ENST00000420390 96 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.13□□□□□ -1.91
SOX4Q06945 MICF-203ENST00000432679 129 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 RPS27P29-201ENST00000463110 252 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 HMGN1P7-201ENST00000491722 313 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 AC093259.1-201ENST00000509755 300 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.13□□□□□ -1.91
SOX4Q06945 RNU6-856P-201ENST00000516959 98 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 AC079600.2-201ENST00000550076 130 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.13□□□□□ -1.91
SOX4Q06945 AC107294.3-201ENST00000609211 526 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 MIR6852-201ENST00000621699 66 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 AC106754.2-201ENST00000623006 233 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 SCARNA15.3-201ENST00000626315 122 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 SCARNA4.1-201ENST00000628597 123 ntBASIC3.13□□□□□ -1.91
SOX4Q06945 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SOX4Q06945 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SOX4Q06945 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.12□□□□□ -1.91
SOX4Q06945 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.12□□□□□ -1.91
SOX4Q06945 RNA5SP125-201ENST00000364843 120 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 SNORA46-201ENST00000384762 135 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 SNORA12.1-201ENST00000390873 148 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AL031121.1-201ENST00000406553 254 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 RNU6-1186P-201ENST00000410429 97 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AC060773.1-201ENST00000421698 310 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 SNRPGP10-201ENST00000432323 225 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 HMGN2P34-201ENST00000437647 269 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AC233266.1-201ENST00000454518 96 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.12□□□□□ -1.91
SOX4Q06945 SCARNA3-201ENST00000517097 143 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 RNU6-1270P-201ENST00000517128 108 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 GTF3AP2-201ENST00000557014 266 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AC007012.1-201ENST00000567192 175 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AC024614.2-201ENST00000577584 372 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AC242852.1-201ENST00000612151 96 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AC244015.1-201ENST00000622301 99 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 AL365361.1-201ENST00000566942 3481 ntBASIC3.12□□□□□ -1.91
SOX4Q06945 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.12□□□□□ -1.91
SOX4Q06945 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.12□□□□□ -1.91
SOX4Q06945 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.11□□□□□ -1.91
SOX4Q06945 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.11□□□□□ -1.91
SOX4Q06945 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SOX4Q06945 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SOX4Q06945 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SOX4Q06945 RNU6-1107P-201ENST00000364817 104 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 Y_RNA.332-201ENST00000365271 113 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 SNORA9.2-201ENST00000365361 133 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 SNORD72-201ENST00000390994 80 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 MIR1289-1-201ENST00000408836 144 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 RNU6-554P-201ENST00000410466 106 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 RNA5SP274-201ENST00000410484 108 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 AC007064.1-201ENST00000412238 351 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 CALM2P4-201ENST00000430810 426 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 RN7SL633P-201ENST00000488974 297 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 RNA5SP367-201ENST00000516557 118 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 MIR3199-1-201ENST00000582434 88 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.11□□□□□ -1.91
SOX4Q06945 MIR5739-201ENST00000619803 80 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 MIR7157-201ENST00000635801 60 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 MIR7515-201ENST00000637837 67 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 AC096644.4-201ENST00000563417 2912 ntBASIC3.11□□□□□ -1.91
SOX4Q06945 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SOX4Q06945 RNU6-888P-201ENST00000363010 101 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 SNORA5B-201ENST00000363786 132 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 Y_RNA.253-201ENST00000364562 112 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 CD24P4-201ENST00000382840 243 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 SNORD24-201ENST00000383884 75 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 RNA5SP136-201ENST00000410906 107 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 AC244505.4-201ENST00000434905 287 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 AL161788.1-201ENST00000441805 169 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 SSXP5-201ENST00000443473 287 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX4Q06945 RNU6-991P-201ENST00000516168 107 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 Y_RNA.666-201ENST00000516187 112 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 RNU7-99P-201ENST00000516271 62 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 RNU6-1146P-201ENST00000516282 102 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 RNU6-113P-201ENST00000516653 101 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 RNU6-1149P-201ENST00000516810 97 ntBASIC3.1□□□□□ -1.91
SOX4Q06945 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 344.9 ms