Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.5□□□□□ -2.01
COL4A3Q01955 RNA5SP325-201ENST00000363756 130 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 RNU6-674P-201ENST00000363831 107 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 SNORD31B-201ENST00000364977 69 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 SNORA25.9-201ENST00000365087 128 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 RNU6-438P-201ENST00000365561 103 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 Y_RNA.393-201ENST00000383936 102 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
COL4A3Q01955 RNU6-460P-201ENST00000391158 108 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 Y_RNA.622-201ENST00000411091 108 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 AC007064.1-201ENST00000412238 351 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 AL035461.1-201ENST00000421490 332 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.5□□□□□ -2.01
COL4A3Q01955 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 snoU13.31-201ENST00000607291 104 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL4A3Q01955 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
COL4A3Q01955 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
COL4A3Q01955 RNU6-944P-201ENST00000364023 107 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 RNA5SP496-201ENST00000391240 109 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 SNORD88.1-201ENST00000408684 91 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 RNU6-57P-201ENST00000411348 103 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 CYCSP49-201ENST00000420810 319 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 RNU6-437P-201ENST00000459408 95 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.49□□□□□ -2.01
COL4A3Q01955 RNA5SP281-201ENST00000516504 135 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 AP001328.1-201ENST00000528550 176 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 MIR378D2-201ENST00000580636 98 ntBASIC2.49□□□□□ -2.01
COL4A3Q01955 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL4A3Q01955 AC110774.1-201ENST00000623567 2018 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.48□□□□□ -2.01
COL4A3Q01955 AL356292.1-201ENST00000283110 373 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 SNORD45.3-201ENST00000363836 72 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 SNORA14A-201ENST00000364773 135 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 RNU6-418P-201ENST00000384035 107 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 RNA5SP511-201ENST00000410487 115 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 RNU2-55P-201ENST00000411146 174 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL4A3Q01955 MRPS36P2-201ENST00000512569 299 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 RNU6-63P-201ENST00000516690 95 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.48□□□□□ -2.01
COL4A3Q01955 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.48□□□□□ -2.01
COL4A3Q01955 AC127455.1-201ENST00000565496 145 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 UCA1.1-201ENST00000620952 75 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 U4.3-201ENST00000621047 82 ntBASIC2.48□□□□□ -2.01
COL4A3Q01955 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.48□□□□□ -2.01
COL4A3Q01955 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
COL4A3Q01955 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL4A3Q01955 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.48□□□□□ -2.01
COL4A3Q01955 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
COL4A3Q01955 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
COL4A3Q01955 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL4A3Q01955 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL4A3Q01955 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL4A3Q01955 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-486P-201ENST00000363116 107 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU4-41P-201ENST00000364426 143 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 Y_RNA.251-201ENST00000364551 99 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-1080P-201ENST00000383982 107 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-1083P-201ENST00000384022 107 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-136P-201ENST00000384663 107 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.47□□□□□ -2.01
COL4A3Q01955 AC010154.1-201ENST00000425857 269 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RPS26P55-201ENST00000471178 356 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-586P-201ENST00000517265 104 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.47□□□□□ -2.01
COL4A3Q01955 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.47□□□□□ -2.01
COL4A3Q01955 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL4A3Q01955 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU4-13P-201ENST00000364019 141 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-1082P-201ENST00000364574 107 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-1240P-201ENST00000365155 104 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-597P-201ENST00000365620 102 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 SNORA75.5-201ENST00000391291 81 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 AL023284.1-201ENST00000403956 276 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.47□□□□□ -2.01
COL4A3Q01955 RNU6-711P-201ENST00000517255 106 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 AC025647.1-201ENST00000517879 253 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 MIR1273D-201ENST00000577266 86 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 MIR5092-201ENST00000583139 88 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.47□□□□□ -2.01
COL4A3Q01955 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.47□□□□□ -2.01
COL4A3Q01955 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.47□□□□□ -2.01
COL4A3Q01955 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 AC110079.1-202ENST00000635213 138 ntBASIC2.47□□□□□ -2.01
COL4A3Q01955 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.46□□□□□ -2.01
COL4A3Q01955 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
COL4A3Q01955 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A3Q01955 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A3Q01955 RNU6-834P-201ENST00000362367 110 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 SNORA25.6-201ENST00000364121 118 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A3Q01955 AC023449.1-201ENST00000454464 154 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 AC010531.2-201ENST00000465012 153 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 ATP5EP1-201ENST00000510257 156 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 RNA5SP385-201ENST00000515947 110 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 RNU6-659P-201ENST00000516454 104 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A3Q01955 MIR4474-201ENST00000579189 78 ntBASIC2.46□□□□□ -2.02
COL4A3Q01955 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms