Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SNORA72.2-201ENST00000365028 127 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 Y_RNA.477-201ENST00000384352 108 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 MIR515-2-201ENST00000384883 83 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 MIR515-1-201ENST00000384884 83 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 MIR17-201ENST00000385012 84 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 SNORA17.3-201ENST00000391159 129 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 RNA5SP212-201ENST00000391223 107 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 AL117342.1-201ENST00000404861 406 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 U3.40-201ENST00000408706 208 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 RNA5SP501-201ENST00000410990 112 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 AC016909.1-201ENST00000415916 166 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 CST2P1-201ENST00000425770 87 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 AL135790.2-201ENST00000437701 267 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 Y_RNA.641-201ENST00000459414 105 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 RNU6-155P-201ENST00000516347 100 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 RNU6-388P-201ENST00000517012 105 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 RNU6-389P-201ENST00000517048 105 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 RNU6-111P-201ENST00000517179 105 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.95□□□□□ -2.1
CLCN3P51790 MIR4282-201ENST00000583613 67 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 AC011921.3-201ENST00000605540 361 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 AC141273.2-201ENST00000618989 130 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 AC006435.5-201ENST00000624486 112 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 ZNF702P-202ENST00000434269 1966 ntBASIC1.95□□□□□ -2.1
CLCN3P51790 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
CLCN3P51790 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.94□□□□□ -2.1
CLCN3P51790 snoU2-30.2-201ENST00000362805 70 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 Y_RNA.257-201ENST00000364596 102 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 Y_RNA.275-201ENST00000364726 110 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
CLCN3P51790 SNORA53-201ENST00000391141 249 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 AL355796.1-201ENST00000406706 323 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 RNU2-61P-201ENST00000411069 191 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 POLR2KP2-201ENST00000438155 177 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.94□□□□□ -2.1
CLCN3P51790 SNORD2.1-201ENST00000458762 69 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 AC091959.1-201ENST00000495857 238 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 RNA5SP458-201ENST00000516188 119 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 RNU6-191P-201ENST00000516295 94 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 RNU6-107P-201ENST00000516643 102 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 MIR3683-201ENST00000580847 82 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 AC078938.1-201ENST00000620993 318 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 AC006001.4-201ENST00000622243 395 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 MIR338-201ENST00000636369 67 ntBASIC1.94□□□□□ -2.1
CLCN3P51790 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
CLCN3P51790 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
CLCN3P51790 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.82-201ENST00000363000 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.92-201ENST00000363043 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.235-201ENST00000364412 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.306-201ENST00000365015 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.312-201ENST00000365089 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.322-201ENST00000365151 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 SNORA8-201ENST00000384574 139 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 AL031003.1-201ENST00000404229 172 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 SUMO1P2-201ENST00000452524 304 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.650-201ENST00000459002 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 RNA5SP233-201ENST00000459153 113 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 RNU6-1041P-201ENST00000516254 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 SNORA27.4-201ENST00000516650 95 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 SCARNA24.2-201ENST00000516968 130 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.777-201ENST00000516982 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.93□□□□□ -2.1
CLCN3P51790 RPL21P9-201ENST00000556149 474 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 MIR3935-201ENST00000583472 104 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.771-201ENST00000598668 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 DEFB117-201ENST00000602356 141 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.93□□□□□ -2.1
CLCN3P51790 AC009779.6-201ENST00000603972 165 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 BX284668.6-201ENST00000606899 438 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.789-201ENST00000622480 102 ntBASIC1.93□□□□□ -2.1
CLCN3P51790 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
CLCN3P51790 Y_RNA.44-201ENST00000362676 108 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 Y_RNA.76-201ENST00000362931 109 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 RNU4-80P-201ENST00000363200 141 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 RNU6-740P-201ENST00000364734 105 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 SNORA20.1-201ENST00000364790 130 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 Y_RNA.329-201ENST00000365209 107 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 MIR1253-201ENST00000408273 105 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 AL356379.1-201ENST00000414105 126 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.92□□□□□ -2.1
CLCN3P51790 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.92□□□□□ -2.1
CLCN3P51790 AC099677.2-201ENST00000436385 175 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.92□□□□□ -2.1
CLCN3P51790 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.92□□□□□ -2.1
CLCN3P51790 SUB1P4-201ENST00000566062 339 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 MIR4419B-201ENST00000577260 68 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 MIR4287-201ENST00000579398 78 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 MIR3145-201ENST00000580727 82 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.92□□□□□ -2.1
CLCN3P51790 AC069114.2-201ENST00000604699 304 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.92□□□□□ -2.1
CLCN3P51790 AL773524.1-201ENST00000614065 229 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.92□□□□□ -2.1
CLCN3P51790 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
CLCN3P51790 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms