Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU1-78P-201ENST00000391248 165 ntBASIC1.66□□□□□ -2.14
MSH2P43246 SNORA26.9-201ENST00000391322 122 ntBASIC1.66□□□□□ -2.14
MSH2P43246 RNU4-30P-201ENST00000410245 143 ntBASIC1.66□□□□□ -2.14
MSH2P43246 COX6CP10-201ENST00000416832 224 ntBASIC1.66□□□□□ -2.14
MSH2P43246 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.66□□□□□ -2.14
MSH2P43246 RNU6-63P-201ENST00000516690 95 ntBASIC1.66□□□□□ -2.14
MSH2P43246 RNU6-548P-201ENST00000517083 115 ntBASIC1.66□□□□□ -2.14
MSH2P43246 MIR4709-201ENST00000577272 72 ntBASIC1.66□□□□□ -2.14
MSH2P43246 MIR4300-201ENST00000581016 96 ntBASIC1.66□□□□□ -2.14
MSH2P43246 AC091178.2-201ENST00000584401 117 ntBASIC1.66□□□□□ -2.14
MSH2P43246 AL355297.3-201ENST00000604082 446 ntBASIC1.66□□□□□ -2.14
MSH2P43246 AC095038.3-201ENST00000634439 195 ntBASIC1.66□□□□□ -2.14
MSH2P43246 WWP1P1-201ENST00000466609 2769 ntBASIC1.66□□□□□ -2.14
MSH2P43246 AC091021.1-201ENST00000468051 388 ntBASIC1.65□□□□□ -2.15
MSH2P43246 AC010655.3-201ENST00000478818 450 ntBASIC1.65□□□□□ -2.15
MSH2P43246 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.65□□□□□ -2.15
MSH2P43246 AC131281.1-201ENST00000522984 164 ntBASIC1.65□□□□□ -2.15
MSH2P43246 AP003072.1-201ENST00000531740 145 ntBASIC1.65□□□□□ -2.15
MSH2P43246 AL929325.1-201ENST00000603096 117 ntBASIC1.65□□□□□ -2.15
MSH2P43246 MIR376A1-201ENST00000616574 68 ntBASIC1.65□□□□□ -2.15
MSH2P43246 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.65□□□□□ -2.15
MSH2P43246 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.65□□□□□ -2.15
MSH2P43246 RNU6-440P-201ENST00000390882 105 ntBASIC1.64□□□□□ -2.15
MSH2P43246 SNORD115-46-201ENST00000390982 71 ntBASIC1.64□□□□□ -2.15
MSH2P43246 RNU6-985P-201ENST00000410182 104 ntBASIC1.64□□□□□ -2.15
MSH2P43246 RN7SKP200-201ENST00000410564 320 ntBASIC1.64□□□□□ -2.15
MSH2P43246 AL591806.2-201ENST00000433122 173 ntBASIC1.64□□□□□ -2.15
MSH2P43246 SEPT14P8-201ENST00000508026 178 ntBASIC1.64□□□□□ -2.15
MSH2P43246 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.64□□□□□ -2.15
MSH2P43246 RNU6-764P-201ENST00000516396 105 ntBASIC1.64□□□□□ -2.15
MSH2P43246 RNU6-341P-201ENST00000516973 96 ntBASIC1.64□□□□□ -2.15
MSH2P43246 SNORD113-5-201ENST00000607261 78 ntBASIC1.64□□□□□ -2.15
MSH2P43246 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.64□□□□□ -2.15
MSH2P43246 MIR8081-201ENST00000611533 95 ntBASIC1.64□□□□□ -2.15
MSH2P43246 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
MSH2P43246 Y_RNA.153-201ENST00000363615 91 ntBASIC1.63□□□□□ -2.15
MSH2P43246 Y_RNA.276-201ENST00000364732 109 ntBASIC1.63□□□□□ -2.15
MSH2P43246 Y_RNA.286-201ENST00000364813 102 ntBASIC1.63□□□□□ -2.15
MSH2P43246 Y_RNA.326-201ENST00000365176 113 ntBASIC1.63□□□□□ -2.15
MSH2P43246 RNU6-203P-201ENST00000384038 104 ntBASIC1.63□□□□□ -2.15
MSH2P43246 RNU6-136P-201ENST00000384663 107 ntBASIC1.63□□□□□ -2.15
MSH2P43246 RNU6-1011P-201ENST00000384668 107 ntBASIC1.63□□□□□ -2.15
MSH2P43246 MIR562-201ENST00000384894 95 ntBASIC1.63□□□□□ -2.15
MSH2P43246 MIR520G-201ENST00000385064 90 ntBASIC1.63□□□□□ -2.15
MSH2P43246 RNA5SP511-201ENST00000410487 115 ntBASIC1.63□□□□□ -2.15
MSH2P43246 RN7SKP101-201ENST00000411376 320 ntBASIC1.63□□□□□ -2.15
MSH2P43246 AL162725.1-201ENST00000435405 301 ntBASIC1.63□□□□□ -2.15
MSH2P43246 RNU7-34P-201ENST00000459394 64 ntBASIC1.63□□□□□ -2.15
MSH2P43246 AC099513.1-201ENST00000490423 301 ntBASIC1.63□□□□□ -2.15
MSH2P43246 SNORA25.15-201ENST00000516487 89 ntBASIC1.63□□□□□ -2.15
MSH2P43246 DEFB117-201ENST00000602356 141 ntBASIC1.63□□□□□ -2.15
MSH2P43246 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
MSH2P43246 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.63□□□□□ -2.15
MSH2P43246 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
MSH2P43246 Y_RNA.105-201ENST00000363182 111 ntBASIC1.62□□□□□ -2.15
MSH2P43246 SNORD113-8-201ENST00000363497 74 ntBASIC1.62□□□□□ -2.15
MSH2P43246 Y_RNA.172-201ENST00000363765 102 ntBASIC1.62□□□□□ -2.15
MSH2P43246 Y_RNA.210-201ENST00000364161 110 ntBASIC1.62□□□□□ -2.15
MSH2P43246 Y_RNA.214-201ENST00000364201 112 ntBASIC1.62□□□□□ -2.15
MSH2P43246 Y_RNA.267-201ENST00000364679 109 ntBASIC1.62□□□□□ -2.15
MSH2P43246 Y_RNA.422-201ENST00000384054 114 ntBASIC1.62□□□□□ -2.15
MSH2P43246 SNORD116-13-201ENST00000384408 92 ntBASIC1.62□□□□□ -2.15
MSH2P43246 RNU6-1031P-201ENST00000384773 107 ntBASIC1.62□□□□□ -2.15
MSH2P43246 RNU6-710P-201ENST00000410424 105 ntBASIC1.62□□□□□ -2.15
MSH2P43246 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH2P43246 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.62□□□□□ -2.15
MSH2P43246 ELOCP20-201ENST00000422460 345 ntBASIC1.62□□□□□ -2.15
MSH2P43246 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH2P43246 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.62□□□□□ -2.15
MSH2P43246 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH2P43246 RNA5SP445-201ENST00000515889 115 ntBASIC1.62□□□□□ -2.15
MSH2P43246 SNORA40.15-201ENST00000516884 107 ntBASIC1.62□□□□□ -2.15
MSH2P43246 AC015720.1-201ENST00000565251 277 ntBASIC1.62□□□□□ -2.15
MSH2P43246 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH2P43246 SNORA63-201ENST00000363450 132 ntBASIC1.61□□□□□ -2.15
MSH2P43246 Y_RNA.152-201ENST00000363578 100 ntBASIC1.61□□□□□ -2.15
MSH2P43246 RNU6-770P-201ENST00000363929 105 ntBASIC1.61□□□□□ -2.15
MSH2P43246 Y_RNA.222-201ENST00000364264 102 ntBASIC1.61□□□□□ -2.15
MSH2P43246 SNORD1A-201ENST00000364968 72 ntBASIC1.61□□□□□ -2.15
MSH2P43246 Y_RNA.383-201ENST00000383855 97 ntBASIC1.61□□□□□ -2.15
MSH2P43246 MIR194-1-201ENST00000384892 85 ntBASIC1.61□□□□□ -2.15
MSH2P43246 SNORA12.1-201ENST00000390873 148 ntBASIC1.61□□□□□ -2.15
MSH2P43246 RNU6-121P-201ENST00000410525 99 ntBASIC1.61□□□□□ -2.15
MSH2P43246 AL161935.2-201ENST00000414627 60 ntBASIC1.61□□□□□ -2.15
MSH2P43246 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.61□□□□□ -2.15
MSH2P43246 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH2P43246 AC108210.2-201ENST00000503681 201 ntBASIC1.61□□□□□ -2.15
MSH2P43246 AC079140.2-201ENST00000506193 142 ntBASIC1.61□□□□□ -2.15
MSH2P43246 RNU6-1291P-201ENST00000516591 104 ntBASIC1.61□□□□□ -2.15
MSH2P43246 RNU6-250P-201ENST00000516958 103 ntBASIC1.61□□□□□ -2.15
MSH2P43246 RNU6-1096P-201ENST00000517089 102 ntBASIC1.61□□□□□ -2.15
MSH2P43246 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH2P43246 AC019176.1-201ENST00000518519 225 ntBASIC1.61□□□□□ -2.15
MSH2P43246 AL442663.2-201ENST00000554385 511 ntBASIC1.61□□□□□ -2.15
MSH2P43246 MIR502-201ENST00000606349 86 ntBASIC1.61□□□□□ -2.15
MSH2P43246 AC004832.4-201ENST00000608952 331 ntBASIC1.61□□□□□ -2.15
MSH2P43246 AC021506.2-201ENST00000612354 169 ntBASIC1.61□□□□□ -2.15
MSH2P43246 MIR302D-201ENST00000362275 68 ntBASIC1.6□□□□□ -2.15
MSH2P43246 SNORA1B-201ENST00000362535 133 ntBASIC1.6□□□□□ -2.15
MSH2P43246 RNU6-102P-201ENST00000384485 104 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms