Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MTND4P12-201ENST00000498999 1377 ntBASIC0.81□□□□□ -2.28
SCN1AP35498 RNU6-199P-201ENST00000362954 107 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 Y_RNA.314-201ENST00000365114 102 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 RNU6-767P-201ENST00000384132 107 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 MIR660-201ENST00000385235 97 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 AL451046.2-201ENST00000403074 277 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 RNU4-14P-201ENST00000410858 122 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 Y_RNA.646-201ENST00000410980 101 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.8□□□□□ -2.28
SCN1AP35498 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN1AP35498 MTND1P4-201ENST00000435196 415 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 AC099799.1-201ENST00000439809 192 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 SUMO1P2-201ENST00000452524 304 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 RPL39P38-201ENST00000467018 153 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 OR9P1P-201ENST00000496431 281 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 Y_RNA.718-201ENST00000517110 102 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 RPL21P9-201ENST00000556149 474 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.8□□□□□ -2.28
SCN1AP35498 AC022441.3-201ENST00000605737 136 ntBASIC0.8□□□□□ -2.28
SCN1AP35498 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.8□□□□□ -2.28
SCN1AP35498 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SCN1AP35498 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
SCN1AP35498 MIR26B-201ENST00000362251 77 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 RNU6-424P-201ENST00000384367 105 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AC138393.2-201ENST00000414742 246 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN1AP35498 AC093019.1-201ENST00000443135 252 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 RNU7-152P-201ENST00000458982 64 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 UBL5P1-201ENST00000507979 193 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AC144568.1-201ENST00000520139 137 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AP002001.1-203ENST00000534002 267 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AC109810.1-201ENST00000534066 224 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 RAB11AP2-201ENST00000545905 639 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.79□□□□□ -2.28
SCN1AP35498 RNU4-41P-201ENST00000364426 143 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 Y_RNA.428-201ENST00000384078 102 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 Y_RNA.496-201ENST00000384444 101 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
SCN1AP35498 SNORD78.2-201ENST00000391076 69 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN1AP35498 RPL39P39-201ENST00000455840 151 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 LINC01399-202ENST00000458450 244 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 RNU6-264P-201ENST00000517134 104 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AL512605.2-201ENST00000592972 256 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 HSPE1P19-201ENST00000603327 295 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 AC211469.2-201ENST00000605461 205 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 SNORD3E-202ENST00000627253 216 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 U6.115-201ENST00000636045 103 ntBASIC0.79□□□□□ -2.28
SCN1AP35498 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.79□□□□□ -2.28
SCN1AP35498 RNU6-1084P-201ENST00000362498 107 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 Y_RNA.106-201ENST00000363189 100 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 Y_RNA.124-201ENST00000363339 93 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 SNORA20B-201ENST00000384220 132 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 Y_RNA.474-201ENST00000384341 102 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 MIR190B-201ENST00000401119 79 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 MTCO3P19-201ENST00000415864 321 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN1AP35498 AC048334.1-201ENST00000477975 159 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 AL358944.1-201ENST00000528537 144 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 AC090049.2-201ENST00000550377 109 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 AP001485.1-201ENST00000604799 199 ntBASIC0.78□□□□□ -2.28
SCN1AP35498 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.78□□□□□ -2.28
SCN1AP35498 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
SCN1AP35498 RNU6-833P-201ENST00000363486 107 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 Y_RNA.243-201ENST00000364481 109 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 Y_RNA.331-201ENST00000365267 102 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNU6-117P-201ENST00000365415 107 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNU6-939P-201ENST00000384634 107 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNU6-1105P-201ENST00000384774 107 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNY4P36-201ENST00000391116 96 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN1AP35498 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN1AP35498 PDCL2P1-201ENST00000419302 352 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNU6-436P-201ENST00000516171 114 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 AC022868.1-201ENST00000517767 391 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 SNORA28-201ENST00000606769 126 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 MIR3674-201ENST00000636576 68 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.77□□□□□ -2.29
SCN1AP35498 HSBP1P2-201ENST00000299671 229 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 Y_RNA.142-201ENST00000363491 102 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 Y_RNA.446-201ENST00000384178 104 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 Y_RNA.482-201ENST00000384377 111 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 SNORD116-13-201ENST00000384408 92 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 MIR628-201ENST00000385229 95 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 AF228730.4-201ENST00000421457 183 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 PIGPP3-201ENST00000425307 415 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RBMX2P4-201ENST00000441256 376 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 AC099513.1-201ENST00000490423 301 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNA5SP168-201ENST00000516642 112 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNU6-341P-201ENST00000516973 96 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 RNU7-128P-201ENST00000517247 62 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 SNORD58B-201ENST00000607313 66 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 AC240442.1-201ENST00000616055 283 ntBASIC0.77□□□□□ -2.29
SCN1AP35498 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.76□□□□□ -2.29
SCN1AP35498 RNU4-73P-201ENST00000363164 141 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 Y_RNA.160-201ENST00000363677 92 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
SCN1AP35498 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms