Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.94□□□□□ -2.1
HOXD3P31249 RNU6-1219P-201ENST00000516143 112 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 RNU6-453P-201ENST00000516819 85 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 RNU7-128P-201ENST00000517247 62 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 MIR3126-201ENST00000577443 74 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 MIR5092-201ENST00000583139 88 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 RNU2-4P-201ENST00000606190 192 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 MIR548AY-201ENST00000617669 107 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 U4.3-201ENST00000621047 82 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 AC012640.5-201ENST00000623897 319 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 AC022513.1-201ENST00000624512 117 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 CTSLP2-204ENST00000629029 392 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 U6.108-201ENST00000637764 58 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 ZNF658B-202ENST00000615961 3375 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 AC131280.1-202ENST00000624067 4211 ntBASIC1.94□□□□□ -2.1
HOXD3P31249 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXD3P31249 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXD3P31249 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
HOXD3P31249 RNU1-96P-201ENST00000364163 162 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 Y_RNA.233-201ENST00000364407 101 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 RNU6-886P-201ENST00000384319 105 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 MIR626-201ENST00000385032 94 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 RNU4-53P-201ENST00000410828 140 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 Z98742.3-201ENST00000418637 326 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 AL353689.1-201ENST00000438895 199 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 ATP5J2P3-201ENST00000451550 258 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 UBL5P3-201ENST00000475112 231 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 SCARNA8-201ENST00000515924 131 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.93□□□□□ -2.1
HOXD3P31249 AC026271.5-201ENST00000577873 130 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 AL031274.2-201ENST00000599419 203 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 AC073413.2-201ENST00000604332 360 ntBASIC1.93□□□□□ -2.1
HOXD3P31249 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD3P31249 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD3P31249 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD3P31249 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD3P31249 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD3P31249 RNU4-13P-201ENST00000364019 141 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RNU6-969P-201ENST00000383900 105 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RNU6-1323P-201ENST00000384025 107 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 Y_RNA.555-201ENST00000384673 110 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RNU6-376P-201ENST00000384731 106 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 MT-TT-201ENST00000387460 66 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 AL355497.1-201ENST00000406262 551 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 SNORD23.1-201ENST00000408212 104 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RPS4XP11-201ENST00000446897 772 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXD3P31249 RNU1-131P-201ENST00000458943 161 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RPL23AP54-201ENST00000495129 419 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RPS29P21-201ENST00000496272 170 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RNU6-1146P-201ENST00000516282 102 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RNA5SP82-201ENST00000516707 92 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 AP003357.1-201ENST00000604497 148 ntBASIC1.92□□□□□ -2.1
HOXD3P31249 RNU6-23P-201ENST00000363283 107 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 Y_RNA.238-201ENST00000364441 102 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 SNORA8.3-201ENST00000384679 139 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 Y_RNA.571-201ENST00000384753 98 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 MIR504-201ENST00000385065 83 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 RNU11-3P-201ENST00000391111 133 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 RNU6-381P-201ENST00000391259 108 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 RN7SL636P-201ENST00000497504 294 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 RNU6-1278P-201ENST00000516130 107 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 AC127455.1-201ENST00000565496 145 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 AL929325.1-201ENST00000603096 117 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 AC072026.1-201ENST00000605023 201 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 Y_RNA.802-201ENST00000614892 130 ntBASIC1.91□□□□□ -2.1
HOXD3P31249 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
HOXD3P31249 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
HOXD3P31249 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
HOXD3P31249 RNU4-17P-201ENST00000365598 141 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 SNORA6-201ENST00000384033 151 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 MIR597-201ENST00000384968 97 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 RNA5SP270-201ENST00000411361 118 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXD3P31249 AC245047.8-201ENST00000456455 284 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 AC091021.1-201ENST00000468051 388 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 RPL36AP21-201ENST00000490372 323 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 AL163195.1-201ENST00000496941 348 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.9□□□□□ -2.11
HOXD3P31249 RNU7-193P-201ENST00000516723 65 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXD3P31249 MRPS18CP4-201ENST00000535821 231 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 AC004486.1-201ENST00000546846 233 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 MIR4524B-201ENST00000581569 115 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 U6.106-201ENST00000636360 105 ntBASIC1.9□□□□□ -2.11
HOXD3P31249 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
HOXD3P31249 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HOXD3P31249 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.89□□□□□ -2.11
HOXD3P31249 Y_RNA.7-201ENST00000362352 102 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 RNU1-58P-201ENST00000362413 163 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 Y_RNA.180-201ENST00000363867 113 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 RNA5SP456-201ENST00000364002 114 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 MIR144-201ENST00000384886 86 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 RNA5SP425-201ENST00000410336 112 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXD3P31249 AC245102.2-201ENST00000448956 180 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms