Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.48□□□□□ -1.85
RFX1P22670 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
RFX1P22670 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
RFX1P22670 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.47□□□□□ -1.85
RFX1P22670 SNORA33-201ENST00000363664 130 ntBASIC3.47□□□□□ -1.85
RFX1P22670 SNORA25.7-201ENST00000364375 127 ntBASIC3.47□□□□□ -1.85
RFX1P22670 Y_RNA.242-201ENST00000364473 110 ntBASIC3.47□□□□□ -1.85
RFX1P22670 Y_RNA.634-201ENST00000364811 113 ntBASIC3.47□□□□□ -1.85
RFX1P22670 CYCSP49-201ENST00000420810 319 ntBASIC3.47□□□□□ -1.85
RFX1P22670 AC022018.1-201ENST00000430685 241 ntBASIC3.47□□□□□ -1.85
RFX1P22670 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.47□□□□□ -1.85
RFX1P22670 RNU6-1211P-201ENST00000459179 105 ntBASIC3.47□□□□□ -1.85
RFX1P22670 AC068657.1-201ENST00000520807 306 ntBASIC3.47□□□□□ -1.85
RFX1P22670 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.47□□□□□ -1.85
RFX1P22670 AC104984.5-201ENST00000586878 94 ntBASIC3.47□□□□□ -1.85
RFX1P22670 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
RFX1P22670 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
RFX1P22670 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.46□□□□□ -1.86
RFX1P22670 Y_RNA.71-201ENST00000362892 104 ntBASIC3.46□□□□□ -1.86
RFX1P22670 Y_RNA.91-201ENST00000363042 107 ntBASIC3.46□□□□□ -1.86
RFX1P22670 SNORA8-201ENST00000384574 139 ntBASIC3.46□□□□□ -1.86
RFX1P22670 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.46□□□□□ -1.86
RFX1P22670 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.46□□□□□ -1.86
RFX1P22670 MIR2682-201ENST00000580305 110 ntBASIC3.46□□□□□ -1.86
RFX1P22670 AC005786.1-201ENST00000588553 154 ntBASIC3.46□□□□□ -1.86
RFX1P22670 uc_338.25-201ENST00000613756 156 ntBASIC3.46□□□□□ -1.86
RFX1P22670 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
RFX1P22670 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.45□□□□□ -1.86
RFX1P22670 RNU6-862P-201ENST00000362804 105 ntBASIC3.45□□□□□ -1.86
RFX1P22670 RNU6-1290P-201ENST00000362957 109 ntBASIC3.45□□□□□ -1.86
RFX1P22670 RNU6-23P-201ENST00000363283 107 ntBASIC3.45□□□□□ -1.86
RFX1P22670 Y_RNA.218-201ENST00000364218 104 ntBASIC3.45□□□□□ -1.86
RFX1P22670 Y_RNA.253-201ENST00000364562 112 ntBASIC3.45□□□□□ -1.86
RFX1P22670 Y_RNA.267-201ENST00000364679 109 ntBASIC3.45□□□□□ -1.86
RFX1P22670 RNU1-148P-201ENST00000384472 162 ntBASIC3.45□□□□□ -1.86
RFX1P22670 AL109933.2-201ENST00000452651 260 ntBASIC3.45□□□□□ -1.86
RFX1P22670 NDUFA4P2-201ENST00000489989 244 ntBASIC3.45□□□□□ -1.86
RFX1P22670 RNA5SP137-201ENST00000516833 135 ntBASIC3.45□□□□□ -1.86
RFX1P22670 AC090142.3-201ENST00000519012 385 ntBASIC3.45□□□□□ -1.86
RFX1P22670 AC245166.1-201ENST00000521012 253 ntBASIC3.45□□□□□ -1.86
RFX1P22670 AP001328.1-201ENST00000528550 176 ntBASIC3.45□□□□□ -1.86
RFX1P22670 AP002004.2-201ENST00000531656 154 ntBASIC3.45□□□□□ -1.86
RFX1P22670 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.45□□□□□ -1.86
RFX1P22670 AC087685.1-201ENST00000587507 141 ntBASIC3.45□□□□□ -1.86
RFX1P22670 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
RFX1P22670 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.44□□□□□ -1.86
RFX1P22670 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
RFX1P22670 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.44□□□□□ -1.86
RFX1P22670 RNU1-58P-201ENST00000362413 163 ntBASIC3.44□□□□□ -1.86
RFX1P22670 SNORD56.5-201ENST00000364281 72 ntBASIC3.44□□□□□ -1.86
RFX1P22670 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
RFX1P22670 RNU6-1336P-201ENST00000383886 109 ntBASIC3.44□□□□□ -1.86
RFX1P22670 Y_RNA.486-201ENST00000384398 107 ntBASIC3.44□□□□□ -1.86
RFX1P22670 RNU7-26P-201ENST00000458980 63 ntBASIC3.44□□□□□ -1.86
RFX1P22670 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.44□□□□□ -1.86
RFX1P22670 AL163195.1-201ENST00000496941 348 ntBASIC3.44□□□□□ -1.86
RFX1P22670 RNU2-56P-201ENST00000516826 190 ntBASIC3.44□□□□□ -1.86
RFX1P22670 Y_RNA.714-201ENST00000517065 90 ntBASIC3.44□□□□□ -1.86
RFX1P22670 MIR3126-201ENST00000577443 74 ntBASIC3.44□□□□□ -1.86
RFX1P22670 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
RFX1P22670 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
RFX1P22670 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
RFX1P22670 Y_RNA.127-201ENST00000363386 109 ntBASIC3.43□□□□□ -1.86
RFX1P22670 Y_RNA.584-201ENST00000391090 114 ntBASIC3.43□□□□□ -1.86
RFX1P22670 SNORA11.4-201ENST00000408823 129 ntBASIC3.43□□□□□ -1.86
RFX1P22670 SNRPGP10-201ENST00000432323 225 ntBASIC3.43□□□□□ -1.86
RFX1P22670 AC099677.2-201ENST00000436385 175 ntBASIC3.43□□□□□ -1.86
RFX1P22670 RN7SL863P-201ENST00000462370 296 ntBASIC3.43□□□□□ -1.86
RFX1P22670 RPL12P50-201ENST00000603116 116 ntBASIC3.43□□□□□ -1.86
RFX1P22670 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.43□□□□□ -1.86
RFX1P22670 AC011603.4-201ENST00000611325 277 ntBASIC3.43□□□□□ -1.86
RFX1P22670 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
RFX1P22670 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
RFX1P22670 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
RFX1P22670 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
RFX1P22670 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.42□□□□□ -1.86
RFX1P22670 MIR6715A-201ENST00000615929 79 ntBASIC3.42□□□□□ -1.86
RFX1P22670 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.41□□□□□ -1.86
RFX1P22670 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
RFX1P22670 SNORA38-201ENST00000363946 132 ntBASIC3.41□□□□□ -1.86
RFX1P22670 Y_RNA.261-201ENST00000364631 102 ntBASIC3.41□□□□□ -1.86
RFX1P22670 RNA5SP205-201ENST00000364653 136 ntBASIC3.41□□□□□ -1.86
RFX1P22670 SNORD50B-201ENST00000364995 70 ntBASIC3.41□□□□□ -1.86
RFX1P22670 RNU6-735P-201ENST00000410612 107 ntBASIC3.41□□□□□ -1.86
RFX1P22670 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.41□□□□□ -1.86
RFX1P22670 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.41□□□□□ -1.86
RFX1P22670 RNU6-1234P-201ENST00000516877 103 ntBASIC3.41□□□□□ -1.86
RFX1P22670 RNU6-365P-201ENST00000517113 106 ntBASIC3.41□□□□□ -1.86
RFX1P22670 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.41□□□□□ -1.86
RFX1P22670 U7.2-201ENST00000607576 63 ntBASIC3.41□□□□□ -1.86
RFX1P22670 AC022513.1-201ENST00000624512 117 ntBASIC3.41□□□□□ -1.86
RFX1P22670 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
RFX1P22670 SNORD116-14-201ENST00000383894 92 ntBASIC3.4□□□□□ -1.87
RFX1P22670 SNORD116-17-201ENST00000383929 92 ntBASIC3.4□□□□□ -1.87
RFX1P22670 RNU6-80P-201ENST00000384195 107 ntBASIC3.4□□□□□ -1.87
RFX1P22670 SNORD116-15-201ENST00000384445 92 ntBASIC3.4□□□□□ -1.87
RFX1P22670 SNORD116-19-201ENST00000384729 92 ntBASIC3.4□□□□□ -1.87
RFX1P22670 SNORA46-201ENST00000384762 135 ntBASIC3.4□□□□□ -1.87
RFX1P22670 FTH1P12-201ENST00000432137 551 ntBASIC3.4□□□□□ -1.87
RFX1P22670 AL049830.1-201ENST00000468034 425 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms