Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6-197P-201ENST00000516680 100 ntBASIC2.38□□□□□ -2.03
HOXA3O43365 AC107016.2-201ENST00000547968 190 ntBASIC2.38□□□□□ -2.03
HOXA3O43365 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXA3O43365 SNORA33-201ENST00000363664 130 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 RNU6-851P-201ENST00000384565 107 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 SNORA40-201ENST00000388090 126 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 RNU6-588P-201ENST00000410281 105 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXA3O43365 AC105272.1-201ENST00000438604 198 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 RN7SL75P-201ENST00000461926 281 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 RNU6-1291P-201ENST00000516591 104 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 RN7SKP282-201ENST00000516824 299 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 RNU6-56P-201ENST00000516986 93 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 SCARNA20.6-201ENST00000517251 106 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.37□□□□□ -2.03
HOXA3O43365 AC026271.5-201ENST00000577873 130 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 JPX_2.1-201ENST00000614161 69 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.37□□□□□ -2.03
HOXA3O43365 MIR6079-201ENST00000635807 62 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 ZNF271P-202ENST00000465539 1970 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 AC018630.2-201ENST00000534866 2403 ntBASIC2.37□□□□□ -2.03
HOXA3O43365 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
HOXA3O43365 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXA3O43365 AC073325.2-201ENST00000339545 159 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 RNU6-862P-201ENST00000362804 105 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 RNU6-1164P-201ENST00000364428 107 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 Y_RNA.267-201ENST00000364679 109 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 RNU6-597P-201ENST00000365620 102 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 RNU6-1081P-201ENST00000384537 107 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 RNA5SP323-201ENST00000391094 133 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXA3O43365 MTND4LP9-201ENST00000427694 174 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 AC018634.1-201ENST00000437554 401 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXA3O43365 RNU7-197P-201ENST00000458836 62 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 RN7SL20P-201ENST00000488827 297 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 SNORD77.4-201ENST00000516158 81 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 RNU6-341P-201ENST00000516973 96 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 AL160236.1-201ENST00000556317 195 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 MIR4672-201ENST00000583126 81 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 Pinc.1-201ENST00000616452 154 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 AC007318.2-201ENST00000620999 243 ntBASIC2.36□□□□□ -2.03
HOXA3O43365 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXA3O43365 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
HOXA3O43365 AL355596.1-201ENST00000565399 3996 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXA3O43365 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXA3O43365 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXA3O43365 SNORD115-3-201ENST00000363100 82 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 SNORA9.2-201ENST00000365361 133 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 SNORA8-201ENST00000384574 139 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 Y_RNA.542-201ENST00000384641 111 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 MIR562-201ENST00000384894 95 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 RNA5SP274-201ENST00000410484 108 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 CYCSP49-201ENST00000420810 319 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 CST2P1-201ENST00000425770 87 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 AC087499.2-201ENST00000432861 149 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 UQCRHP3-201ENST00000451503 251 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 AC092991.1-201ENST00000477176 376 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 AL163195.1-201ENST00000496941 348 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 RNA5SP153-201ENST00000516498 76 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 MIR4319-201ENST00000577285 85 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 MIR3169-201ENST00000578032 83 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 AC022202.1-201ENST00000613515 211 ntBASIC2.35□□□□□ -2.03
HOXA3O43365 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
HOXA3O43365 SNORD56.5-201ENST00000364281 72 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU6-1082P-201ENST00000364574 107 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 Y_RNA.420-201ENST00000384043 110 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU6-22P-201ENST00000384355 107 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 SNORA46-201ENST00000384762 135 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 MIR515-2-201ENST00000384883 83 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 MIR515-1-201ENST00000384884 83 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 SNORA75.5-201ENST00000391291 81 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU2-70P-201ENST00000410718 179 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXA3O43365 AL109933.2-201ENST00000452651 260 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU7-26P-201ENST00000458980 63 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 HMGN1P7-201ENST00000491722 313 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 OR9P1P-201ENST00000496431 281 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RN7SKP132-201ENST00000516001 208 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU1-143P-201ENST00000516296 146 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU6-62P-201ENST00000516526 102 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU7-149P-201ENST00000516739 59 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 AC024995.1-201ENST00000523014 93 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 AC120024.3-201ENST00000603167 156 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 U1.23-201ENST00000610293 146 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 RNU1-68P-201ENST00000615382 146 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 U1.39-201ENST00000621562 146 ntBASIC2.34□□□□□ -2.03
HOXA3O43365 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
HOXA3O43365 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
HOXA3O43365 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.34□□□□□ -2.04
HOXA3O43365 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXA3O43365 AL136360.1-201ENST00000503377 1900 ntBASIC2.33□□□□□ -2.04
HOXA3O43365 Z82195.2-201ENST00000612348 18351 ntBASIC2.33□□□□□ -2.04
HOXA3O43365 RNU6-23P-201ENST00000363283 107 ntBASIC2.33□□□□□ -2.04
HOXA3O43365 Y_RNA.253-201ENST00000364562 112 ntBASIC2.33□□□□□ -2.04
HOXA3O43365 RNU1-91P-201ENST00000364746 163 ntBASIC2.33□□□□□ -2.04
HOXA3O43365 Y_RNA.634-201ENST00000364811 113 ntBASIC2.33□□□□□ -2.04
HOXA3O43365 U8.9-201ENST00000365667 134 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 255.3 ms