Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.2□□□□□ -2.22
LHX3Q9UBR4 AC096644.2-201ENST00000429278 159 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.2□□□□□ -2.22
LHX3Q9UBR4 STAG3L5P-204ENST00000443759 179 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 AC091021.1-201ENST00000468051 388 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 TRMT112P2-201ENST00000512910 132 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 RNU7-4P-201ENST00000516961 62 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 AC144568.1-201ENST00000520139 137 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.2□□□□□ -2.22
LHX3Q9UBR4 AC023442.1-201ENST00000531247 422 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 MIR6078-201ENST00000611069 100 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 AC004467.1-201ENST00000615678 330 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
LHX3Q9UBR4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
LHX3Q9UBR4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.4-201ENST00000362333 112 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.238-201ENST00000364441 102 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 RNU6-136P-201ENST00000384663 107 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
LHX3Q9UBR4 RNA5SP247-201ENST00000411181 105 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 SDAD1P3-201ENST00000427380 333 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 SUMO1P2-201ENST00000452524 304 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.19□□□□□ -2.22
LHX3Q9UBR4 RPL39P38-201ENST00000467018 153 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 AC093852.1-201ENST00000503587 266 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 RNU6-1278P-201ENST00000516130 107 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 RNU6-699P-201ENST00000517081 110 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.718-201ENST00000517110 102 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.19□□□□□ -2.22
LHX3Q9UBR4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.19□□□□□ -2.22
LHX3Q9UBR4 AC055872.1-201ENST00000570978 278 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 AL355375.2-201ENST00000574825 175 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 MIR3664-201ENST00000579074 99 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 AC084781.2-201ENST00000615568 161 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 MIR8065-201ENST00000620577 100 ntBASIC1.19□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.265-201ENST00000364677 108 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 MIR559-201ENST00000385188 96 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 MIR660-201ENST00000385235 97 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 AC015922.2-201ENST00000435593 184 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 AL137792.2-201ENST00000443484 235 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 ELOCP24-201ENST00000456370 334 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 RNU6-507P-201ENST00000516045 100 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 RNU6-875P-201ENST00000516488 106 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 RNU6-1291P-201ENST00000516591 104 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 RNU6-63P-201ENST00000516690 95 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 RN7SKP88-201ENST00000516847 250 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 RNU6-341P-201ENST00000516973 96 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 RBM11P1-201ENST00000604951 799 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 7SK.8-201ENST00000612110 250 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 AC025253.1-201ENST00000613623 543 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 7SK.11-201ENST00000615477 250 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 7SK.13-201ENST00000622040 250 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 AC106754.2-201ENST00000623006 233 ntBASIC1.18□□□□□ -2.22
LHX3Q9UBR4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.17□□□□□ -2.22
LHX3Q9UBR4 RNU6-490P-201ENST00000362985 107 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 RNU6-708P-201ENST00000384217 107 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 MIR873-201ENST00000401120 77 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.17□□□□□ -2.22
LHX3Q9UBR4 AC093019.1-201ENST00000443135 252 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.632-201ENST00000459189 102 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 RNU7-28P-201ENST00000516759 62 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 RNU2-56P-201ENST00000516826 190 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 AL160236.1-201ENST00000556317 195 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 MIR4778-201ENST00000577635 80 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 AC091178.2-201ENST00000584401 117 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 MIR4781-201ENST00000585250 76 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 AC005828.6-201ENST00000606610 232 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 AC011476.5-201ENST00000615594 130 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 U2.1-201ENST00000618978 145 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 AC127459.3-201ENST00000624328 466 ntBASIC1.17□□□□□ -2.22
LHX3Q9UBR4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.17□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.243-201ENST00000364481 109 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 RNU4-76P-201ENST00000364509 141 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.356-201ENST00000365475 113 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.529-201ENST00000384586 119 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 MIR628-201ENST00000385229 95 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.16□□□□□ -2.22
LHX3Q9UBR4 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 FCF1P4-201ENST00000448326 183 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 AC233266.1-201ENST00000454518 96 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 AC019288.1-201ENST00000557918 224 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 MIR4801-201ENST00000582704 82 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 AC242852.1-201ENST00000612151 96 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 AC244015.1-201ENST00000622301 99 ntBASIC1.16□□□□□ -2.22
LHX3Q9UBR4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
LHX3Q9UBR4 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 SNORD114-7-201ENST00000362520 77 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 SNORA1B-201ENST00000362535 133 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.101-201ENST00000363154 102 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 RNU6-117P-201ENST00000365415 107 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 RNU6-1040P-201ENST00000383974 107 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 RNU6-505P-201ENST00000384427 107 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 RNY3P4-201ENST00000384428 101 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.15□□□□□ -2.23
LHX3Q9UBR4 CALM2P4-201ENST00000430810 426 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AC099799.1-201ENST00000439809 192 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 CHEK2P4-201ENST00000450340 246 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms