Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 U8.1-201ENST00000362843 134 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 Y_RNA.111-201ENST00000363248 100 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 Y_RNA.796-201ENST00000364268 102 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 Y_RNA.634-201ENST00000364811 113 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 Y_RNA.294-201ENST00000364916 102 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 Y_RNA.799-201ENST00000364992 102 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 CD24P4-201ENST00000382840 243 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 RNU6-1144P-201ENST00000384247 104 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 MIR95-201ENST00000385072 81 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 MIR1253-201ENST00000408273 105 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 AC123900.1-201ENST00000420390 96 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 AC107083.1-201ENST00000439643 279 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 AL161788.1-201ENST00000441805 169 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 RN7SKP132-201ENST00000516001 208 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 RNU6-772P-201ENST00000516042 105 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 RNU6-856P-201ENST00000516959 98 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 PRELID2P1-201ENST00000552837 301 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 MIR4662B-201ENST00000579498 81 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 MIR3914-2-201ENST00000637339 95 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 AC138915.1-201ENST00000565427 1685 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 AC103988.1-201ENST00000566382 2177 ntBASIC3.35□□□□□ -1.87
ZKSCAN3Q9BRR0 RNU6-1209P-201ENST00000363655 107 ntBASIC3.34□□□□□ -1.87
ZKSCAN3Q9BRR0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.34□□□□□ -1.87
ZKSCAN3Q9BRR0 AP004217.1-201ENST00000480579 346 ntBASIC3.34□□□□□ -1.87
ZKSCAN3Q9BRR0 AC092185.1-201ENST00000491371 97 ntBASIC3.34□□□□□ -1.87
ZKSCAN3Q9BRR0 AC093259.1-201ENST00000509755 300 ntBASIC3.34□□□□□ -1.87
ZKSCAN3Q9BRR0 U6.95-201ENST00000636931 70 ntBASIC3.34□□□□□ -1.87
ZKSCAN3Q9BRR0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.34□□□□□ -1.88
ZKSCAN3Q9BRR0 Y_RNA.91-201ENST00000363042 107 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6-743P-201ENST00000364151 106 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 Y_RNA.280-201ENST00000364765 112 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 Y_RNA.332-201ENST00000365271 113 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6-851P-201ENST00000384565 107 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6-429P-201ENST00000384582 108 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 MIR562-201ENST00000384894 95 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORA48.8-201ENST00000391324 134 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 AL158147.1-201ENST00000443970 75 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 AC091826.1-201ENST00000514065 313 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 SCARNA13-201ENST00000516672 275 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORA48.11-201ENST00000517015 89 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 JPX_2.1-201ENST00000614161 69 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 U6.73-201ENST00000619194 103 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORA50A-202ENST00000629536 136 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 AC009487.2-201ENST00000420969 6821 ntBASIC3.33□□□□□ -1.88
ZKSCAN3Q9BRR0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORA68.1-201ENST00000364537 132 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6-1138P-201ENST00000365359 106 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORD18B-201ENST00000365659 72 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 MIR520G-201ENST00000385064 90 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 MIR23A-201ENST00000385245 73 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 OR9P1P-201ENST00000496431 281 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 PDCD5P2-201ENST00000507570 312 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 CYCSP26-201ENST00000534107 320 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 AL356280.1-201ENST00000603614 379 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 U2.20-201ENST00000613956 192 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 MIR6129-201ENST00000616087 109 ntBASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZKSCAN3Q9BRR0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU1-112P-201ENST00000364401 164 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 MIR512-1-201ENST00000384913 84 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNY4P18-201ENST00000391107 89 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU11-5P-201ENST00000391216 129 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6-1146P-201ENST00000516282 102 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNA5SP367-201ENST00000516557 118 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU7-149P-201ENST00000516739 59 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6-1096P-201ENST00000517089 102 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 AC107016.2-201ENST00000547968 190 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 MTND5P34-201ENST00000568888 325 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 MIR3121-201ENST00000579680 77 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 Pinc.1-201ENST00000616452 154 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 AC096644.4-201ENST00000563417 2912 ntBASIC3.31□□□□□ -1.88
ZKSCAN3Q9BRR0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU1-23P-201ENST00000363361 144 ntBASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 AL603914.1-201ENST00000401964 204 ntBASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 MLLT10P1-201ENST00000418346 262 ntBASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 AC087499.2-201ENST00000432861 149 ntBASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 RPS29P6-201ENST00000438196 145 ntBASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 Y_RNA.709-201ENST00000516952 92 ntBASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.3□□□□□ -1.88
ZKSCAN3Q9BRR0 Y_RNA.114-201ENST00000363265 113 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU2-63P-201ENST00000410792 194 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 232.9 ms