Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 RNU6-667P-201ENST00000517186 102 ntBASIC3.66□□□□□ -1.82
USB1Q9BQ65 AL355297.2-201ENST00000604792 129 ntBASIC3.66□□□□□ -1.82
USB1Q9BQ65 U6.98-201ENST00000637157 84 ntBASIC3.66□□□□□ -1.82
USB1Q9BQ65 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
USB1Q9BQ65 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
USB1Q9BQ65 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USB1Q9BQ65 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USB1Q9BQ65 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
USB1Q9BQ65 SPRR2C-201ENST00000290702 219 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USB1Q9BQ65 MIR592-201ENST00000384959 97 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 MIR605-201ENST00000385078 83 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 MIR561-201ENST00000385216 97 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 RNA5SP482-201ENST00000391269 118 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 MIR1193-201ENST00000408109 78 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 AL356095.1-201ENST00000417217 199 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 AC091826.1-201ENST00000514065 313 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 MIR4286-201ENST00000580651 93 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.65□□□□□ -1.83
USB1Q9BQ65 MIR486-1-201ENST00000612171 68 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.65□□□□□ -1.83
USB1Q9BQ65 AC064859.1-201ENST00000624741 174 ntBASIC3.65□□□□□ -1.83
USB1Q9BQ65 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
USB1Q9BQ65 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.65□□□□□ -1.83
USB1Q9BQ65 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USB1Q9BQ65 SNORD114-6-201ENST00000364393 72 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 Y_RNA.244-201ENST00000364484 109 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 SNORA27-201ENST00000384323 126 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 SNORA18-201ENST00000384416 132 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 RNU1-13P-201ENST00000384499 162 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.64□□□□□ -1.83
USB1Q9BQ65 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.64□□□□□ -1.83
USB1Q9BQ65 AC023141.11-201ENST00000508864 202 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 SNORD59.2-201ENST00000516873 68 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.64□□□□□ -1.83
USB1Q9BQ65 MIR548Z-201ENST00000584743 97 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USB1Q9BQ65 RNA5SP196-201ENST00000625967 102 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 AC095038.3-201ENST00000634439 195 ntBASIC3.64□□□□□ -1.83
USB1Q9BQ65 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.64□□□□□ -1.83
USB1Q9BQ65 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
USB1Q9BQ65 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USB1Q9BQ65 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.64□□□□□ -1.83
USB1Q9BQ65 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.64□□□□□ -1.83
USB1Q9BQ65 MFSD8-233ENST00000641482 4860 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 Y_RNA.221-201ENST00000364248 96 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 SNORD38C-201ENST00000384381 69 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 SRIP3-201ENST00000413200 219 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.63□□□□□ -1.83
USB1Q9BQ65 MRPL35P3-201ENST00000421557 364 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 CST2P1-201ENST00000425770 87 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 RPL29P14-201ENST00000495837 428 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 SEM1P1-201ENST00000506694 209 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 RN7SL600P-201ENST00000581811 299 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 MIR432-201ENST00000606207 94 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 AC034229.5-201ENST00000624258 185 ntBASIC3.63□□□□□ -1.83
USB1Q9BQ65 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.63□□□□□ -1.83
USB1Q9BQ65 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
USB1Q9BQ65 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USB1Q9BQ65 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 Y_RNA.96-201ENST00000363092 109 ntBASIC3.62□□□□□ -1.83
USB1Q9BQ65 Y_RNA.241-201ENST00000364470 117 ntBASIC3.62□□□□□ -1.83
USB1Q9BQ65 RNU6-60P-201ENST00000364792 103 ntBASIC3.62□□□□□ -1.83
USB1Q9BQ65 RNU6-675P-201ENST00000384236 104 ntBASIC3.62□□□□□ -1.83
USB1Q9BQ65 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 YPEL5P2-201ENST00000605553 359 ntBASIC3.62□□□□□ -1.83
USB1Q9BQ65 AC021613.1-201ENST00000623880 111 ntBASIC3.62□□□□□ -1.83
USB1Q9BQ65 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USB1Q9BQ65 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
USB1Q9BQ65 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
USB1Q9BQ65 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
USB1Q9BQ65 SNORA68.1-201ENST00000364537 132 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 Y_RNA.299-201ENST00000364973 94 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 SNORD116-22-201ENST00000384430 92 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 BTF3P4-201ENST00000418852 495 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.61□□□□□ -1.83
USB1Q9BQ65 AC006539.3-201ENST00000454258 129 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
USB1Q9BQ65 RN7SL297P-201ENST00000483161 293 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 RNU7-28P-201ENST00000516759 62 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 MIR4777-201ENST00000583710 86 ntBASIC3.61□□□□□ -1.83
USB1Q9BQ65 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
USB1Q9BQ65 AC091152.2-201ENST00000591628 2569 ntBASIC3.6□□□□□ -1.83
USB1Q9BQ65 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
USB1Q9BQ65 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.6□□□□□ -1.83
USB1Q9BQ65 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USB1Q9BQ65 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USB1Q9BQ65 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.6□□□□□ -1.83
USB1Q9BQ65 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
USB1Q9BQ65 Y_RNA.99-201ENST00000363138 105 ntBASIC3.6□□□□□ -1.83
USB1Q9BQ65 SNORD45B-201ENST00000364617 72 ntBASIC3.6□□□□□ -1.83
USB1Q9BQ65 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
USB1Q9BQ65 RNU6-402P-201ENST00000410678 103 ntBASIC3.6□□□□□ -1.83
USB1Q9BQ65 TRIAP1P1-201ENST00000427062 225 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms