Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 Y_RNA.483-201ENST00000384380 101 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 SNORA48.1-201ENST00000390879 135 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 SNORA48.3-201ENST00000391081 134 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 RNU6-1248P-201ENST00000391096 64 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 RNU2-7P-201ENST00000410794 178 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 EBAG9P1-201ENST00000418955 543 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 MTND2P29-201ENST00000438595 412 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.39□□□□□ -2.03
NUP88Q99567 MTND4LP30-201ENST00000454092 297 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 snoU13.23-201ENST00000458863 104 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 AC108210.2-201ENST00000503681 201 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 RNU6-1337P-201ENST00000516525 95 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 AC015712.3-201ENST00000559380 164 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.39□□□□□ -2.03
NUP88Q99567 MIR5002-201ENST00000584713 97 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 AC073413.2-201ENST00000604332 360 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.39□□□□□ -2.03
NUP88Q99567 ZNF702P-202ENST00000434269 1966 ntBASIC2.39□□□□□ -2.03
NUP88Q99567 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
NUP88Q99567 RNU1-22P-201ENST00000363334 158 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 RNU4-13P-201ENST00000364019 141 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 Y_RNA.288-201ENST00000364854 92 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 RNU6-136P-201ENST00000384663 107 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 Y_RNA.556-201ENST00000384677 113 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 MIR568-201ENST00000385036 95 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 RNU11-5P-201ENST00000391216 129 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 RNU2-61P-201ENST00000411069 191 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 RNU6-1338P-201ENST00000516328 91 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 RNU6-63P-201ENST00000516690 95 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 7SK.10-201ENST00000621414 298 ntBASIC2.38□□□□□ -2.03
NUP88Q99567 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.37□□□□□ -2.03
NUP88Q99567 AL391987.6-201ENST00000305671 199 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
NUP88Q99567 SNORD114-7-201ENST00000362520 77 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 RNU6-1019P-201ENST00000364424 107 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 SNORA16B-201ENST00000364674 135 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 RNA5SP37-201ENST00000365420 130 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 RNU6-574P-201ENST00000384265 107 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 MT-TW-201ENST00000387382 68 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 AC090255.1-201ENST00000495779 349 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 RNU7-99P-201ENST00000516271 62 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 AC024995.1-201ENST00000523014 93 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.37□□□□□ -2.03
NUP88Q99567 U4.1-201ENST00000620349 87 ntBASIC2.37□□□□□ -2.03
NUP88Q99567 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
NUP88Q99567 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
NUP88Q99567 Y_RNA.237-201ENST00000364439 102 ntBASIC2.36□□□□□ -2.03
NUP88Q99567 Y_RNA.341-201ENST00000365341 102 ntBASIC2.36□□□□□ -2.03
NUP88Q99567 Y_RNA.418-201ENST00000384029 102 ntBASIC2.36□□□□□ -2.03
NUP88Q99567 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.36□□□□□ -2.03
NUP88Q99567 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.36□□□□□ -2.03
NUP88Q99567 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.35□□□□□ -2.03
NUP88Q99567 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.35□□□□□ -2.03
NUP88Q99567 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.35□□□□□ -2.03
NUP88Q99567 RNU6-326P-201ENST00000365480 107 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 Y_RNA.361-201ENST00000365515 120 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.35□□□□□ -2.03
NUP88Q99567 RNU6-463P-201ENST00000384340 107 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 U8.13-201ENST00000390842 128 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 MTCO1P5-201ENST00000433573 344 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 HSPE1P21-201ENST00000438283 308 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 AC069257.2-201ENST00000441819 155 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 RNU6-717P-201ENST00000459076 104 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 AL163195.1-201ENST00000496941 348 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 SERF1AP1-201ENST00000514575 187 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 RNU1-40P-201ENST00000516816 164 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 RNU1-97P-201ENST00000516872 164 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 IGLV3-17-201ENST00000519099 244 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.35□□□□□ -2.03
NUP88Q99567 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.35□□□□□ -2.03
NUP88Q99567 AC084364.2-201ENST00000546924 395 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 MIR5694-201ENST00000581190 76 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 MIR4503-201ENST00000582187 83 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 MIR3149-201ENST00000584629 83 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.35□□□□□ -2.03
NUP88Q99567 RNU6-702P-201ENST00000364982 107 ntBASIC2.34□□□□□ -2.03
NUP88Q99567 SNORA6-201ENST00000384033 151 ntBASIC2.34□□□□□ -2.03
NUP88Q99567 HSPE1P13-201ENST00000451143 297 ntBASIC2.34□□□□□ -2.03
NUP88Q99567 AL021397.1-201ENST00000451806 248 ntBASIC2.34□□□□□ -2.03
NUP88Q99567 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.34□□□□□ -2.03
NUP88Q99567 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
NUP88Q99567 DEFB122-202ENST00000569013 197 ntBASIC2.34□□□□□ -2.03
NUP88Q99567 AP001282.2-201ENST00000616149 309 ntBASIC2.34□□□□□ -2.03
NUP88Q99567 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
NUP88Q99567 Y_RNA.136-201ENST00000363444 102 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 RNU6-472P-201ENST00000384299 107 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 SNORD116-13-201ENST00000384408 92 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 CYCSP49-201ENST00000420810 319 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.33□□□□□ -2.04
NUP88Q99567 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.33□□□□□ -2.04
NUP88Q99567 AC025033.1-201ENST00000463883 194 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 AC091959.1-201ENST00000495857 238 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 RNU6-191P-201ENST00000516295 94 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 AC121758.2-201ENST00000553271 193 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 MIR5089-201ENST00000580047 84 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 MIR6845-201ENST00000613182 61 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 AP000553.5-201ENST00000641933 54 ntBASIC2.33□□□□□ -2.04
NUP88Q99567 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 443.2 ms