Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
BEST3Q8N1M1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.81□□□□□ -2.12
BEST3Q8N1M1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
BEST3Q8N1M1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
BEST3Q8N1M1 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AL359851.1-201ENST00000569460 4997 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 RNU1-22P-201ENST00000363334 158 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.124-201ENST00000363339 93 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.176-201ENST00000363815 109 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.222-201ENST00000364264 102 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.286-201ENST00000364813 102 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 RNU6-505P-201ENST00000384427 107 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 SNORA8-201ENST00000384574 139 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 RNU6-713P-201ENST00000384761 107 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 RNU2-61P-201ENST00000411069 191 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 EBAG9P1-201ENST00000418955 543 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.8□□□□□ -2.12
BEST3Q8N1M1 POLR2KP2-201ENST00000438155 177 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 HSPE1P13-201ENST00000451143 297 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 RPL23AP3-201ENST00000453844 468 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 HSPE1P25-201ENST00000455484 251 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AC098869.1-201ENST00000481627 292 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AC097462.1-201ENST00000514125 324 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 RNU7-172P-201ENST00000517125 64 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AC084364.2-201ENST00000546924 395 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AC110588.1-201ENST00000559699 137 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 MIR4287-201ENST00000579398 78 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 MIR5089-201ENST00000580047 84 ntBASIC1.8□□□□□ -2.12
BEST3Q8N1M1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.8□□□□□ -2.12
BEST3Q8N1M1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
BEST3Q8N1M1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.26-201ENST00000362539 101 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 snoU2_19.2-201ENST00000363024 80 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 RNU6-238P-201ENST00000363313 106 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 SNORA33-201ENST00000363664 130 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 RNA5SP99-201ENST00000364020 114 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.383-201ENST00000383855 97 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.574-201ENST00000384766 95 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 RNU6-1105P-201ENST00000384774 107 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 SNORA40.18-201ENST00000391200 128 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.79□□□□□ -2.12
BEST3Q8N1M1 RN7SL274P-201ENST00000492268 272 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.79□□□□□ -2.12
BEST3Q8N1M1 RNU6-1278P-201ENST00000516130 107 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 MIR514B-201ENST00000516774 80 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.79□□□□□ -2.12
BEST3Q8N1M1 AL773524.1-201ENST00000614065 229 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 AC127459.3-201ENST00000624328 466 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 U6.108-201ENST00000637764 58 ntBASIC1.79□□□□□ -2.12
BEST3Q8N1M1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
BEST3Q8N1M1 Y_RNA.149-201ENST00000363558 117 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RNU6-112P-201ENST00000363599 104 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RNU6-102P-201ENST00000384485 104 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 MIR17-201ENST00000385012 84 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 SNORA26.9-201ENST00000391322 122 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RNA5SP100-201ENST00000410903 110 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RNA5SP59-201ENST00000410922 110 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RPL21P38-201ENST00000418090 167 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 AC245047.4-201ENST00000433189 144 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 HMGN2P23-201ENST00000456759 269 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RNA5SP57-201ENST00000459463 123 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RPS26P45-201ENST00000471748 340 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 AC010409.1-201ENST00000487382 476 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 AL163195.1-201ENST00000496941 348 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RNU7-128P-201ENST00000517247 62 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.78□□□□□ -2.12
BEST3Q8N1M1 RPL21P9-201ENST00000556149 474 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.78□□□□□ -2.12
BEST3Q8N1M1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.78□□□□□ -2.12
BEST3Q8N1M1 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.78□□□□□ -2.12
BEST3Q8N1M1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
BEST3Q8N1M1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.13
BEST3Q8N1M1 RNU6-1309P-201ENST00000363305 108 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 Y_RNA.133-201ENST00000363428 110 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 RNU6-290P-201ENST00000365212 101 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 Y_RNA.569-201ENST00000384749 103 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 MIR215-201ENST00000384858 110 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 MIR520A-201ENST00000384862 85 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 RNU6-1248P-201ENST00000391096 64 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 AL356379.1-201ENST00000414105 126 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.77□□□□□ -2.13
BEST3Q8N1M1 AC003989.2-201ENST00000440224 169 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 MTND4LP30-201ENST00000454092 297 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 RNU7-94P-201ENST00000459576 63 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 RPL23AP63-201ENST00000498752 471 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 RNA5SP182-201ENST00000516064 82 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.77□□□□□ -2.13
BEST3Q8N1M1 DEFB117-201ENST00000602356 141 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 AC005034.5-201ENST00000604219 466 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 U6.104-201ENST00000637979 90 ntBASIC1.77□□□□□ -2.13
BEST3Q8N1M1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
BEST3Q8N1M1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
BEST3Q8N1M1 Y_RNA.47-201ENST00000362697 108 ntBASIC1.76□□□□□ -2.13
BEST3Q8N1M1 Y_RNA.84-201ENST00000363011 104 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms