| PRUNE1 | Q86TP1 | RPS29P23-201 | ENST00000458635 | 123 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | AC091021.1-201 | ENST00000468051 | 388 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | RNU6-1278P-201 | ENST00000516130 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | RNU6-63P-201 | ENST00000516690 | 95 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | AC016885.2-201 | ENST00000522598 | 261 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | AL160236.1-201 | ENST00000556317 | 195 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | AL021879.1-201 | ENST00000611756 | 288 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | DLEU2_2.2-201 | ENST00000615474 | 90 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | AC007485.1-201 | ENST00000616755 | 206 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | AC090971.5-201 | ENST00000621102 | 293 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | 5S_rRNA.13-201 | ENST00000622298 | 123 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | LINC00645-203 | ENST00000557399 | 3512 nt | TSL 1 (best) BASIC | 1.41 | □□□□□ -2.18 | | |
| PRUNE1 | Q86TP1 | FABP12-201 | ENST00000360464 | 551 nt | APPRIS P1 TSL 1 (best) BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | U8.1-201 | ENST00000362843 | 134 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.230-201 | ENST00000364348 | 109 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.267-201 | ENST00000364679 | 109 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.395-201 | ENST00000383945 | 109 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.446-201 | ENST00000384178 | 104 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-505P-201 | ENST00000384427 | 107 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR764-201 | ENST00000390811 | 85 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORA17.3-201 | ENST00000391159 | 129 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL031003.1-201 | ENST00000404229 | 172 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL034345.1-201 | ENST00000407768 | 123 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-155P-201 | ENST00000516347 | 100 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-966P-201 | ENST00000516479 | 104 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC084882.1-201 | ENST00000561254 | 555 nt | TSL 4 BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR4422-201 | ENST00000581938 | 83 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL390123.1-201 | ENST00000603216 | 237 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SPTSSB-205 | ENST00000620149 | 231 nt | APPRIS P1 BASIC | 1.4 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | CALCRL-201 | ENST00000392370 | 5155 nt | APPRIS P1 TSL 1 (best) BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC091812.1-201 | ENST00000432235 | 1948 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR302D-201 | ENST00000362275 | 68 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU1-17P-201 | ENST00000363022 | 152 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-324P-201 | ENST00000363957 | 106 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-457P-201 | ENST00000363999 | 107 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-117P-201 | ENST00000365415 | 107 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORD42.2-201 | ENST00000365570 | 69 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.458-201 | ENST00000384240 | 102 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-308P-201 | ENST00000390957 | 107 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.604-201 | ENST00000410574 | 102 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-1199P-201 | ENST00000411249 | 104 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORA70.12-201 | ENST00000516084 | 153 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC015688.6-201 | ENST00000577737 | 104 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC025887.1-201 | ENST00000578349 | 264 nt | TSL 3 BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC091178.2-201 | ENST00000584401 | 117 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL162424.1-201 | ENST00000602325 | 221 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.772-201 | ENST00000606692 | 102 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC010205.1-201 | ENST00000616668 | 449 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL161722.3-201 | ENST00000605789 | 2983 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | BRDT-206 | ENST00000402388 | 3125 nt | APPRIS P3 TSL 1 (best) BASIC | 1.39 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-1123P-201 | ENST00000362347 | 106 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.31-201 | ENST00000362574 | 102 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.61-201 | ENST00000362835 | 102 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.265-201 | ENST00000364677 | 108 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-1175P-201 | ENST00000365200 | 107 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.361-201 | ENST00000365515 | 120 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR513A1-201 | ENST00000385138 | 129 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | STAG3L5P-204 | ENST00000443759 | 179 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.639-201 | ENST00000458981 | 102 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC079140.2-201 | ENST00000506193 | 142 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-1337P-201 | ENST00000516525 | 95 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-1291P-201 | ENST00000516591 | 104 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-341P-201 | ENST00000516973 | 96 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RN7SKP295-201 | ENST00000517264 | 153 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC019176.1-201 | ENST00000518519 | 225 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SUMO2P16-201 | ENST00000519475 | 264 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC022441.3-201 | ENST00000605737 | 136 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL121655.1-201 | ENST00000605811 | 308 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC090574.1-201 | ENST00000623186 | 233 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNA5SP259-201 | ENST00000365541 | 109 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.445-201 | ENST00000384168 | 102 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.460-201 | ENST00000384255 | 102 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.570-201 | ENST00000384750 | 101 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR562-201 | ENST00000384894 | 95 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR150-201 | ENST00000385048 | 84 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORA12.1-201 | ENST00000390873 | 148 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNA5SP511-201 | ENST00000410487 | 115 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MCFD2P1-201 | ENST00000417812 | 300 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MTND4P19-201 | ENST00000446659 | 478 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC233266.1-201 | ENST00000454518 | 96 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL353743.2-204 | ENST00000456242 | 419 nt | TSL 3 BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL163540.1-201 | ENST00000485382 | 386 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU6-436P-201 | ENST00000516171 | 114 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | RNU2-56P-201 | ENST00000516826 | 190 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | CARD18-203 | ENST00000532895 | 422 nt | TSL 2 BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORA28-201 | ENST00000606769 | 126 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC242852.1-201 | ENST00000612151 | 96 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC040896.1-201 | ENST00000613819 | 479 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AC244015.1-201 | ENST00000622301 | 99 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | AL160413.1-201 | ENST00000622780 | 310 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | PTPN22-203 | ENST00000460620 | 1794 nt | TSL 1 (best) BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORA1B-201 | ENST00000362535 | 133 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORD33-201 | ENST00000362761 | 85 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | SNORD14.1-201 | ENST00000365609 | 90 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.471-201 | ENST00000384312 | 102 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | Y_RNA.526-201 | ENST00000384572 | 110 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR520G-201 | ENST00000385064 | 90 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR758-201 | ENST00000390227 | 88 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR1302-11-201 | ENST00000408051 | 138 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| PRUNE1 | Q86TP1 | MIR1302-9-201 | ENST00000408365 | 138 nt | BASIC | 1.36 | □□□□□ -2.19 | | |