Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL137100.2-201ENST00000555786 315 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 RAC1P9-201ENST00000604990 392 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 AC011373.1-201ENST00000607270 237 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 AC103810.8-201ENST00000607347 118 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.158-201ENST00000363651 101 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.178-201ENST00000363832 102 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.210-201ENST00000364161 110 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 SNORA40.18-201ENST00000391200 128 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 MIR934-201ENST00000401241 83 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AL445646.1-201ENST00000431784 216 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AC073910.1-201ENST00000445047 438 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 RN7SL274P-201ENST00000492268 272 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AL163195.1-201ENST00000496941 348 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 RNA5SP20-201ENST00000515976 84 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 RNU6-63P-201ENST00000516690 95 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AC131281.1-201ENST00000522984 164 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AC022616.4-201ENST00000522985 181 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AC022432.1-201ENST00000595739 310 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 AL359075.3-201ENST00000613288 217 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
PDLIM3Q53GG5 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNA5SP190-201ENST00000365222 118 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.331-201ENST00000365267 102 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNU6-439P-201ENST00000384188 106 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNU6-21P-201ENST00000384710 107 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNA5SP109-201ENST00000391010 116 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNU4-62P-201ENST00000410125 130 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNA5SP100-201ENST00000410903 110 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNA5SP59-201ENST00000410922 110 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 EBAG9P1-201ENST00000418955 543 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 AC245047.4-201ENST00000433189 144 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 MRPS10P1-201ENST00000448483 130 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 AC093852.1-201ENST00000503587 266 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 SNORA40.15-201ENST00000516884 107 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 RNU6-897P-201ENST00000517135 105 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.721-201ENST00000517207 102 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 CBX3P4-201ENST00000538909 354 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 MIR4452-201ENST00000583004 71 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 AC073413.2-201ENST00000604332 360 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.62□□□□□ -2.15
PDLIM3Q53GG5 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 SNORA27.1-201ENST00000362604 124 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 RNU6-112P-201ENST00000363599 104 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.551-201ENST00000384661 102 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 AL031003.1-201ENST00000404229 172 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 RNU2-54P-201ENST00000410299 190 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 POLR2J4-204ENST00000418424 324 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 SNORD13-201ENST00000459299 104 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 MTATP8P1-201ENST00000467115 207 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 RNU6-764P-201ENST00000516396 105 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 RNU7-172P-201ENST00000517125 64 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 RNA5SP437-201ENST00000517249 129 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 SUB1P4-201ENST00000566062 339 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 AC136932.1-201ENST00000574771 208 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 AC113195.1-201ENST00000579952 141 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 MIR3145-201ENST00000580727 82 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 AL353149.1-201ENST00000610667 244 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 AC010205.1-201ENST00000616668 449 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 U6.73-201ENST00000619194 103 ntBASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
PDLIM3Q53GG5 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 MIR410-201ENST00000362222 80 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.36-201ENST00000362602 112 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 SNORD115-30-201ENST00000364117 82 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 RNU6-1019P-201ENST00000364424 107 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 RNU6-806P-201ENST00000365147 105 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.326-201ENST00000365176 113 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.329-201ENST00000365209 107 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 SNORA4.2-201ENST00000365313 147 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 RNU6-376P-201ENST00000384731 106 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.570-201ENST00000384750 101 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 MIR520A-201ENST00000384862 85 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 MIR30A-201ENST00000385092 71 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 AL590004.1-201ENST00000405321 300 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 MIR1252-201ENST00000408861 65 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 RNU5A-5P-201ENST00000411054 116 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 RNU6-1199P-201ENST00000411249 104 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 AL139156.1-201ENST00000412785 841 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 AC010154.1-201ENST00000425857 269 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 RPL23AP63-201ENST00000498752 471 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 RNU2-12P-201ENST00000517216 168 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 MIR4285-201ENST00000581001 85 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 AC010900.2-201ENST00000604508 210 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 MIR376A1-201ENST00000616574 68 ntBASIC1.6□□□□□ -2.15
PDLIM3Q53GG5 AC095038.3-201ENST00000634439 195 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms