Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MIR6852-201ENST00000621699 66 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXA4Q00056 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
HOXA4Q00056 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HOXA4Q00056 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.19□□□□□ -2.06
HOXA4Q00056 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
HOXA4Q00056 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXA4Q00056 MIR367-201ENST00000362299 68 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 RNU6-859P-201ENST00000362728 107 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 Y_RNA.99-201ENST00000363138 105 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 RNU1-96P-201ENST00000364163 162 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 Y_RNA.272-201ENST00000364696 102 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 RNU6-275P-201ENST00000364910 107 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 RNU6-1186P-201ENST00000410429 97 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 EBAG9P1-201ENST00000418955 543 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 AL606753.1-201ENST00000427435 87 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 RNA5SP272-201ENST00000516095 111 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 RNU6-561P-201ENST00000516222 102 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 RNU7-116P-201ENST00000516940 62 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 AC007536.1-201ENST00000533382 349 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXA4Q00056 U4atac.1-201ENST00000618345 95 ntBASIC2.19□□□□□ -2.06
HOXA4Q00056 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HOXA4Q00056 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
HOXA4Q00056 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXA4Q00056 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA4Q00056 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA4Q00056 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
HOXA4Q00056 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
HOXA4Q00056 Y_RNA.23-201ENST00000362496 106 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 snoU2-30.2-201ENST00000362805 70 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 RNU6-103P-201ENST00000363686 107 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 SNORD113-1-201ENST00000365321 69 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 Y_RNA.510-201ENST00000384511 114 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 RNU6-376P-201ENST00000384731 106 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 MIR196B-201ENST00000384852 84 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 MIR616-201ENST00000385293 97 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 MIR887-201ENST00000401258 79 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 AC010154.1-201ENST00000425857 269 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 RPS4XP11-201ENST00000446897 772 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXA4Q00056 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 SNORA31.26-201ENST00000517250 137 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXA4Q00056 CYCSP26-201ENST00000534107 320 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 MIR5688-201ENST00000580619 83 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 AL929325.1-201ENST00000603096 117 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 MIR338-201ENST00000636369 67 ntBASIC2.18□□□□□ -2.06
HOXA4Q00056 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.18□□□□□ -2.06
HOXA4Q00056 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXA4Q00056 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA4Q00056 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA4Q00056 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXA4Q00056 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXA4Q00056 SNORA33-201ENST00000363664 130 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 RNU6-1164P-201ENST00000364428 107 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXA4Q00056 RNU7-26P-201ENST00000458980 63 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 RNU6-437P-201ENST00000459408 95 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 RNA5SP320-201ENST00000516263 124 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 RNU6-1146P-201ENST00000516282 102 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 RNU7-128P-201ENST00000517247 62 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 AC109810.1-201ENST00000534066 224 ntBASIC2.17□□□□□ -2.06
HOXA4Q00056 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXA4Q00056 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXA4Q00056 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXA4Q00056 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HOXA4Q00056 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.16□□□□□ -2.06
HOXA4Q00056 SNORD115-3-201ENST00000363100 82 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 RNA5SP493-201ENST00000364115 91 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 Y_RNA.357-201ENST00000365487 109 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 SNORA72-201ENST00000384339 132 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 MIR9-1-201ENST00000385198 89 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 AL117342.1-201ENST00000404861 406 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 AL606845.1-201ENST00000404881 255 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 EDDM3CP-201ENST00000415977 425 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 AC063976.3-201ENST00000426849 329 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 RPL39P40-201ENST00000445481 146 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 RNU1-131P-201ENST00000458943 161 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 MIR4672-201ENST00000583126 81 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 AC006023.1-201ENST00000603944 259 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 AC073413.2-201ENST00000604332 360 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 AC012640.5-201ENST00000623897 319 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 U6.108-201ENST00000637764 58 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
HOXA4Q00056 AL136360.1-201ENST00000503377 1900 ntBASIC2.16□□□□□ -2.06
HOXA4Q00056 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.16□□□□□ -2.06
HOXA4Q00056 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HOXA4Q00056 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HOXA4Q00056 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.15□□□□□ -2.06
HOXA4Q00056 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
HOXA4Q00056 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
HOXA4Q00056 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXA4Q00056 RNU6-674P-201ENST00000363831 107 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 RNU4-84P-201ENST00000364200 139 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 RNY1P5-201ENST00000383890 115 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 RNU6-160P-201ENST00000384591 107 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 RNU6-131P-201ENST00000391144 107 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 MIR548I2-201ENST00000408348 149 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 RNA5SP184-201ENST00000411071 108 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms