Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.686-201ENST00000516548 134 ntBASIC2.9□□□□□ -1.95
RNF4P78317 SCARNA20.6-201ENST00000517251 106 ntBASIC2.9□□□□□ -1.95
RNF4P78317 MIR622-201ENST00000638396 96 ntBASIC2.9□□□□□ -1.95
RNF4P78317 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
RNF4P78317 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.9□□□□□ -1.95
RNF4P78317 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
RNF4P78317 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
RNF4P78317 RNU1-96P-201ENST00000364163 162 ntBASIC2.89□□□□□ -1.95
RNF4P78317 Y_RNA.525-201ENST00000384570 113 ntBASIC2.89□□□□□ -1.95
RNF4P78317 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.89□□□□□ -1.95
RNF4P78317 RNU7-107P-201ENST00000459121 61 ntBASIC2.89□□□□□ -1.95
RNF4P78317 RN7SL499P-201ENST00000481141 276 ntBASIC2.89□□□□□ -1.95
RNF4P78317 YWHAEP4-201ENST00000505390 198 ntBASIC2.89□□□□□ -1.95
RNF4P78317 RNU4-57P-201ENST00000515980 135 ntBASIC2.89□□□□□ -1.95
RNF4P78317 AC104027.1-201ENST00000521887 300 ntBASIC2.89□□□□□ -1.95
RNF4P78317 MIR3200-201ENST00000580767 85 ntBASIC2.89□□□□□ -1.95
RNF4P78317 Pinc.1-201ENST00000616452 154 ntBASIC2.89□□□□□ -1.95
RNF4P78317 MIR338-201ENST00000636369 67 ntBASIC2.89□□□□□ -1.95
RNF4P78317 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.89□□□□□ -1.95
RNF4P78317 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
RNF4P78317 Y_RNA.267-201ENST00000364679 109 ntBASIC2.88□□□□□ -1.95
RNF4P78317 SNORD20-201ENST00000384550 80 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RNU6-1072P-201ENST00000384703 107 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RNU6-443P-201ENST00000384780 107 ntBASIC2.88□□□□□ -1.95
RNF4P78317 MIR1262-201ENST00000408276 93 ntBASIC2.88□□□□□ -1.95
RNF4P78317 SRIP3-201ENST00000413200 219 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RPL32P35-201ENST00000415214 394 ntBASIC2.88□□□□□ -1.95
RNF4P78317 Z96811.1-201ENST00000445880 108 ntBASIC2.88□□□□□ -1.95
RNF4P78317 OR9P1P-201ENST00000496431 281 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RNA5SP217-201ENST00000515959 91 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RNU7-99P-201ENST00000516271 62 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RNU1-143P-201ENST00000516296 146 ntBASIC2.88□□□□□ -1.95
RNF4P78317 SNORA74D-201ENST00000516404 141 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RNA5SP153-201ENST00000516498 76 ntBASIC2.88□□□□□ -1.95
RNF4P78317 SNORA64.4-201ENST00000516632 81 ntBASIC2.88□□□□□ -1.95
RNF4P78317 AL160236.1-201ENST00000556317 195 ntBASIC2.88□□□□□ -1.95
RNF4P78317 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.88□□□□□ -1.95
RNF4P78317 U1.23-201ENST00000610293 146 ntBASIC2.88□□□□□ -1.95
RNF4P78317 AL359075.3-201ENST00000613288 217 ntBASIC2.88□□□□□ -1.95
RNF4P78317 RNU1-68P-201ENST00000615382 146 ntBASIC2.88□□□□□ -1.95
RNF4P78317 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.88□□□□□ -1.95
RNF4P78317 U1.39-201ENST00000621562 146 ntBASIC2.88□□□□□ -1.95
RNF4P78317 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
RNF4P78317 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
RNF4P78317 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
RNF4P78317 U8.1-201ENST00000362843 134 ntBASIC2.87□□□□□ -1.95
RNF4P78317 RNA5SP383-201ENST00000362934 120 ntBASIC2.87□□□□□ -1.95
RNF4P78317 SNORA12.1-201ENST00000390873 148 ntBASIC2.87□□□□□ -1.95
RNF4P78317 AL353689.1-201ENST00000438895 199 ntBASIC2.87□□□□□ -1.95
RNF4P78317 AL445687.1-201ENST00000439946 251 ntBASIC2.87□□□□□ -1.95
RNF4P78317 AC009238.1-201ENST00000442165 424 ntBASIC2.87□□□□□ -1.95
RNF4P78317 AC009237.6-201ENST00000446969 424 ntBASIC2.87□□□□□ -1.95
RNF4P78317 NDUFA4P2-201ENST00000489989 244 ntBASIC2.87□□□□□ -1.95
RNF4P78317 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.87□□□□□ -1.95
RNF4P78317 MIR3616-201ENST00000584070 92 ntBASIC2.87□□□□□ -1.95
RNF4P78317 AC091178.2-201ENST00000584401 117 ntBASIC2.87□□□□□ -1.95
RNF4P78317 AC091953.5-201ENST00000622919 233 ntBASIC2.87□□□□□ -1.95
RNF4P78317 U6.108-201ENST00000637764 58 ntBASIC2.87□□□□□ -1.95
RNF4P78317 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
RNF4P78317 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
RNF4P78317 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
RNF4P78317 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
RNF4P78317 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
RNF4P78317 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
RNF4P78317 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
RNF4P78317 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
RNF4P78317 AL391516.1-201ENST00000554380 2449 ntBASIC2.86□□□□□ -1.95
RNF4P78317 MIR422A-201ENST00000362286 90 ntBASIC2.86□□□□□ -1.95
RNF4P78317 Y_RNA.99-201ENST00000363138 105 ntBASIC2.86□□□□□ -1.95
RNF4P78317 SNORD56.5-201ENST00000364281 72 ntBASIC2.86□□□□□ -1.95
RNF4P78317 Y_RNA.253-201ENST00000364562 112 ntBASIC2.86□□□□□ -1.95
RNF4P78317 Y_RNA.273-201ENST00000364703 102 ntBASIC2.86□□□□□ -1.95
RNF4P78317 Y_RNA.353-201ENST00000365440 108 ntBASIC2.86□□□□□ -1.95
RNF4P78317 RNU1-109P-201ENST00000383960 147 ntBASIC2.86□□□□□ -1.95
RNF4P78317 Y_RNA.486-201ENST00000384398 107 ntBASIC2.86□□□□□ -1.95
RNF4P78317 MIR483-201ENST00000385070 76 ntBASIC2.86□□□□□ -1.95
RNF4P78317 SNORD67-201ENST00000390833 111 ntBASIC2.86□□□□□ -1.95
RNF4P78317 RNA5SP323-201ENST00000391094 133 ntBASIC2.86□□□□□ -1.95
RNF4P78317 UBBP3-201ENST00000445497 241 ntBASIC2.86□□□□□ -1.95
RNF4P78317 AC008885.1-201ENST00000514930 301 ntBASIC2.86□□□□□ -1.95
RNF4P78317 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.86□□□□□ -1.95
RNF4P78317 MIR4325-201ENST00000583049 90 ntBASIC2.86□□□□□ -1.95
RNF4P78317 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.86□□□□□ -1.95
RNF4P78317 MIR6079-201ENST00000635807 62 ntBASIC2.86□□□□□ -1.95
RNF4P78317 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
RNF4P78317 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
RNF4P78317 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
RNF4P78317 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
RNF4P78317 RNU6-235P-201ENST00000362644 107 ntBASIC2.85□□□□□ -1.95
RNF4P78317 SNORD56.3-201ENST00000363507 71 ntBASIC2.85□□□□□ -1.95
RNF4P78317 RNU6-160P-201ENST00000384591 107 ntBASIC2.85□□□□□ -1.95
RNF4P78317 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.85□□□□□ -1.95
RNF4P78317 RN7SKP220-201ENST00000410611 288 ntBASIC2.85□□□□□ -1.95
RNF4P78317 SNRPGP10-201ENST00000432323 225 ntBASIC2.85□□□□□ -1.95
RNF4P78317 ATP5J2P3-201ENST00000451550 258 ntBASIC2.85□□□□□ -1.95
RNF4P78317 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.85□□□□□ -1.95
RNF4P78317 HMGN1P7-201ENST00000491722 313 ntBASIC2.85□□□□□ -1.95
RNF4P78317 RNA5SP341-201ENST00000516261 117 ntBASIC2.85□□□□□ -1.95
RNF4P78317 RNU6-659P-201ENST00000516454 104 ntBASIC2.85□□□□□ -1.95
RNF4P78317 AC245166.1-201ENST00000521012 253 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms