| WNT3A | P56704 | RNU1-22P-201 | ENST00000363334 | 158 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | Y_RNA.229-201 | ENST00000364347 | 113 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-312P-201 | ENST00000364629 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-1072P-201 | ENST00000384703 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-417P-201 | ENST00000384712 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-376P-201 | ENST00000384731 | 106 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-443P-201 | ENST00000384780 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | MIR27B-201 | ENST00000385129 | 97 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | MIR526A2-201 | ENST00000390198 | 65 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-578P-201 | ENST00000390980 | 103 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-1186P-201 | ENST00000410429 | 97 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | CR769767.1-201 | ENST00000436337 | 346 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | AC097462.1-201 | ENST00000514125 | 324 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU6-1041P-201 | ENST00000516254 | 102 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU7-172P-201 | ENST00000517125 | 64 nt | BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | SCN1A-219 | ENST00000641575 | 12874 nt | APPRIS ALT1 BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | FGF14-201 | ENST00000376131 | 12882 nt | TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| WNT3A | P56704 | ZNF117-204 | ENST00000620222 | 5317 nt | APPRIS P1 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | RNU1-91P-201 | ENST00000364746 | 163 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | MIR1262-201 | ENST00000408276 | 93 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | SRIP3-201 | ENST00000413200 | 219 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | AC010154.1-201 | ENST00000425857 | 269 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | AP001043.2-201 | ENST00000434589 | 288 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | AC011406.1-201 | ENST00000512440 | 370 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | RNA5SP320-201 | ENST00000516263 | 124 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | AC015720.1-201 | ENST00000565251 | 277 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | AC127455.1-201 | ENST00000565496 | 145 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | AP003357.1-201 | ENST00000604497 | 148 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | AC091965.1-202 | ENST00000607662 | 397 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | U2.20-201 | ENST00000613956 | 192 nt | BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | ZMYM2-203 | ENST00000382874 | 10139 nt | APPRIS P1 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | CLLU1-201 | ENST00000378485 | 3897 nt | APPRIS P1 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| WNT3A | P56704 | PCM1-222 | ENST00000524226 | 5955 nt | TSL 1 (best) BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | MAP3K2-203 | ENST00000409947 | 10992 nt | APPRIS P1 TSL 1 (best) BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-103P-201 | ENST00000363686 | 107 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNA5SP456-201 | ENST00000364002 | 114 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNY1P5-201 | ENST00000383890 | 115 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-144P-201 | ENST00000383951 | 107 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-1323P-201 | ENST00000384025 | 107 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | MIR616-201 | ENST00000385293 | 97 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AL121914.1-201 | ENST00000450188 | 156 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | LINC01203-202 | ENST00000456091 | 476 nt | TSL 3 BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RPS29P21-201 | ENST00000496272 | 170 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC109810.1-201 | ENST00000534066 | 224 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| WNT3A | P56704 | DENND4A-202 | ENST00000443035 | 8665 nt | TSL 1 (best) BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC007336.1-201 | ENST00000576365 | 3828 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | ZNF280D-204 | ENST00000558320 | 3666 nt | TSL 1 (best) BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | snoU2-30.2-201 | ENST00000362805 | 70 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | Y_RNA.99-201 | ENST00000363138 | 105 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU4-84P-201 | ENST00000364200 | 139 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | SNORD114-6-201 | ENST00000364393 | 72 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-117P-201 | ENST00000365415 | 107 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-449P-201 | ENST00000383914 | 107 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AL606845.1-201 | ENST00000404881 | 255 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | MIR1278-201 | ENST00000408753 | 81 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNA5SP492-201 | ENST00000411330 | 114 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC116666.1-201 | ENST00000453915 | 551 nt | TSL 5 BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-437P-201 | ENST00000459408 | 95 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AL049873.1-201 | ENST00000480540 | 376 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-1146P-201 | ENST00000516282 | 102 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | NDUFA5P6-201 | ENST00000542110 | 379 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC138625.2-201 | ENST00000563968 | 551 nt | TSL 3 BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | MIR6817-201 | ENST00000615588 | 66 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | KTN1-203 | ENST00000395309 | 4021 nt | APPRIS ALT2 TSL 5 BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | CEP57-213 | ENST00000541150 | 2911 nt | APPRIS ALT2 TSL 5 BASIC | 2.51 | □□□□□ -2.01 | | |
| WNT3A | P56704 | TAB3-205 | ENST00000378933 | 6671 nt | APPRIS P1 TSL 1 (best) BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-151P-201 | ENST00000364158 | 107 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-818P-201 | ENST00000364837 | 108 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-160P-201 | ENST00000384591 | 107 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC006461.1-201 | ENST00000412637 | 326 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | EDDM3CP-201 | ENST00000415977 | 425 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | EBAG9P1-201 | ENST00000418955 | 543 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AL162725.1-201 | ENST00000435405 | 301 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RPS12P2-201 | ENST00000439728 | 269 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC010210.1-203 | ENST00000513905 | 260 nt | TSL 3 BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-561P-201 | ENST00000516222 | 102 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU7-116P-201 | ENST00000516940 | 62 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC073413.2-201 | ENST00000604332 | 360 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC022202.1-201 | ENST00000613515 | 211 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | U4.3-201 | ENST00000621047 | 82 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AC023490.3-201 | ENST00000621762 | 358 nt | TSL 3 BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | MTND1P7-201 | ENST00000632801 | 297 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | AP000550.4-201 | ENST00000639507 | 358 nt | TSL 3 BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | MACC1-202 | ENST00000400331 | 9159 nt | APPRIS P1 TSL 2 BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | GPR22-201 | ENST00000304402 | 2942 nt | APPRIS P1 TSL 1 (best) BASIC | 2.5 | □□□□□ -2.01 | | |
| WNT3A | P56704 | CYLC2-202 | ENST00000487798 | 2053 nt | APPRIS P1 TSL 5 BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | OXR1-215 | ENST00000531443 | 3599 nt | TSL 5 BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | SENP7-205 | ENST00000394091 | 4434 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNA5SP68-201 | ENST00000363885 | 119 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU4-41P-201 | ENST00000364426 | 143 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | DEFA7P-201 | ENST00000382676 | 285 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNA5SP467-201 | ENST00000391274 | 118 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | Y_RNA.622-201 | ENST00000411091 | 108 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RPS4XP11-201 | ENST00000446897 | 772 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RPL36AP21-201 | ENST00000490372 | 323 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | YWHAEP4-201 | ENST00000505390 | 198 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | SNORD116-25-201 | ENST00000516517 | 92 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNA5SP148-201 | ENST00000516527 | 94 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| WNT3A | P56704 | MIR3670-2-201 | ENST00000582974 | 65 nt | BASIC | 2.49 | □□□□□ -2.01 | | |