Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU11-2P-201ENST00000516898 142 ntBASIC0.95□□□□□ -2.26
MSH6P52701 RNA5SP404-201ENST00000517118 132 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AC027419.1-201ENST00000522976 328 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AC018638.8-201ENST00000588755 281 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AC018462.2-201ENST00000605375 395 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AC093913.1-201ENST00000614178 329 ntBASIC0.95□□□□□ -2.26
MSH6P52701 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.95□□□□□ -2.26
MSH6P52701 SNORD3E-202ENST00000627253 216 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AC068647.2-201ENST00000637380 353 ntBASIC0.95□□□□□ -2.26
MSH6P52701 RNU4-40P-201ENST00000364351 143 ntBASIC0.94□□□□□ -2.26
MSH6P52701 SNORA20B-201ENST00000384220 132 ntBASIC0.94□□□□□ -2.26
MSH6P52701 RNU6-35P-201ENST00000384530 107 ntBASIC0.94□□□□□ -2.26
MSH6P52701 MIR660-201ENST00000385235 97 ntBASIC0.94□□□□□ -2.26
MSH6P52701 MIR190B-201ENST00000401119 79 ntBASIC0.94□□□□□ -2.26
MSH6P52701 MTCO3P19-201ENST00000415864 321 ntBASIC0.94□□□□□ -2.26
MSH6P52701 AL139396.1-201ENST00000421137 167 ntBASIC0.94□□□□□ -2.26
MSH6P52701 DYNLT3P2-201ENST00000442517 295 ntBASIC0.94□□□□□ -2.26
MSH6P52701 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.94□□□□□ -2.26
MSH6P52701 MIR4790-201ENST00000577799 79 ntBASIC0.94□□□□□ -2.26
MSH6P52701 AC005014.2-201ENST00000607795 599 ntBASIC0.94□□□□□ -2.26
MSH6P52701 RNU6-1215P-201ENST00000384441 102 ntBASIC0.93□□□□□ -2.26
MSH6P52701 MIR653-201ENST00000385279 96 ntBASIC0.93□□□□□ -2.26
MSH6P52701 RNU6-510P-201ENST00000391239 108 ntBASIC0.93□□□□□ -2.26
MSH6P52701 AC092628.1-201ENST00000436250 252 ntBASIC0.93□□□□□ -2.26
MSH6P52701 AC097462.1-201ENST00000514125 324 ntBASIC0.93□□□□□ -2.26
MSH6P52701 AC105029.1-201ENST00000520250 669 ntBASIC0.93□□□□□ -2.26
MSH6P52701 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.93□□□□□ -2.26
MSH6P52701 MIR3684-201ENST00000579779 74 ntBASIC0.93□□□□□ -2.26
MSH6P52701 AC125232.2-201ENST00000592457 143 ntBASIC0.93□□□□□ -2.26
MSH6P52701 SNORA28-201ENST00000606769 126 ntBASIC0.93□□□□□ -2.26
MSH6P52701 AC002553.4-201ENST00000616896 331 ntBASIC0.93□□□□□ -2.26
MSH6P52701 MIR6079-201ENST00000635807 62 ntBASIC0.93□□□□□ -2.26
MSH6P52701 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
MSH6P52701 Y_RNA.364-201ENST00000365532 101 ntBASIC0.92□□□□□ -2.26
MSH6P52701 SNORA25-201ENST00000384384 134 ntBASIC0.92□□□□□ -2.26
MSH6P52701 RNU6-505P-201ENST00000384427 107 ntBASIC0.92□□□□□ -2.26
MSH6P52701 MTCYBP4-201ENST00000401524 249 ntBASIC0.92□□□□□ -2.26
MSH6P52701 MIR548K-201ENST00000408406 116 ntBASIC0.92□□□□□ -2.26
MSH6P52701 MIR548F1-201ENST00000408667 84 ntBASIC0.92□□□□□ -2.26
MSH6P52701 RNU6-1001P-201ENST00000411265 100 ntBASIC0.92□□□□□ -2.26
MSH6P52701 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.92□□□□□ -2.26
MSH6P52701 AC074133.1-201ENST00000515696 183 ntBASIC0.92□□□□□ -2.26
MSH6P52701 RNU7-172P-201ENST00000517125 64 ntBASIC0.92□□□□□ -2.26
MSH6P52701 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.92□□□□□ -2.26
MSH6P52701 AC091178.2-201ENST00000584401 117 ntBASIC0.92□□□□□ -2.26
MSH6P52701 AC012676.2-201ENST00000619258 186 ntBASIC0.92□□□□□ -2.26
MSH6P52701 AC027335.2-201ENST00000624030 375 ntBASIC0.92□□□□□ -2.26
MSH6P52701 MIR410-201ENST00000362222 80 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNU1-124P-201ENST00000363861 145 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNU4-76P-201ENST00000364509 141 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNU6-1264P-201ENST00000383891 107 ntBASIC0.91□□□□□ -2.26
MSH6P52701 Y_RNA.557-201ENST00000384680 107 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNU6-1050P-201ENST00000410388 107 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNU6-1054P-201ENST00000411293 104 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RAB28P5-201ENST00000427490 651 ntBASIC0.91□□□□□ -2.26
MSH6P52701 PCNPP5-201ENST00000452246 481 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RPL39P28-201ENST00000465655 155 ntBASIC0.91□□□□□ -2.26
MSH6P52701 AC011352.1-201ENST00000512300 793 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNU7-40P-201ENST00000516397 64 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNA5SP168-201ENST00000516642 112 ntBASIC0.91□□□□□ -2.26
MSH6P52701 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.91□□□□□ -2.26
MSH6P52701 AL357075.2-201ENST00000614906 189 ntBASIC0.91□□□□□ -2.26
MSH6P52701 AC106754.2-201ENST00000623006 233 ntBASIC0.91□□□□□ -2.26
MSH6P52701 RNU6-874P-201ENST00000362390 105 ntBASIC0.9□□□□□ -2.27
MSH6P52701 RNA5SP499-201ENST00000363982 119 ntBASIC0.9□□□□□ -2.27
MSH6P52701 RNU6-593P-201ENST00000364716 112 ntBASIC0.9□□□□□ -2.27
MSH6P52701 Y_RNA.339-201ENST00000365325 102 ntBASIC0.9□□□□□ -2.27
MSH6P52701 Y_RNA.473-201ENST00000384333 102 ntBASIC0.9□□□□□ -2.27
MSH6P52701 MIR146A-201ENST00000385201 99 ntBASIC0.9□□□□□ -2.27
MSH6P52701 Y_RNA.594-201ENST00000410373 140 ntBASIC0.9□□□□□ -2.27
MSH6P52701 AC074085.1-201ENST00000413598 418 ntBASIC0.9□□□□□ -2.27
MSH6P52701 AC098934.3-201ENST00000430450 190 ntBASIC0.9□□□□□ -2.27
MSH6P52701 STAG3L5P-204ENST00000443759 179 ntBASIC0.9□□□□□ -2.27
MSH6P52701 RNA5SP20-201ENST00000515976 84 ntBASIC0.9□□□□□ -2.27
MSH6P52701 RNU7-28P-201ENST00000516759 62 ntBASIC0.9□□□□□ -2.27
MSH6P52701 RNU6-341P-201ENST00000516973 96 ntBASIC0.9□□□□□ -2.27
MSH6P52701 AF235103.2-201ENST00000525753 346 ntBASIC0.9□□□□□ -2.27
MSH6P52701 RPL21P9-201ENST00000556149 474 ntBASIC0.9□□□□□ -2.27
MSH6P52701 AL022345.2-201ENST00000606307 135 ntBASIC0.9□□□□□ -2.27
MSH6P52701 GHRLOS.1-201ENST00000610995 70 ntBASIC0.9□□□□□ -2.27
MSH6P52701 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.9□□□□□ -2.27
MSH6P52701 Y_RNA.2-201ENST00000362330 96 ntBASIC0.89□□□□□ -2.27
MSH6P52701 SNORA27.1-201ENST00000362604 124 ntBASIC0.89□□□□□ -2.27
MSH6P52701 RNU6-199P-201ENST00000362954 107 ntBASIC0.89□□□□□ -2.27
MSH6P52701 RNY1P16-201ENST00000363063 111 ntBASIC0.89□□□□□ -2.27
MSH6P52701 Y_RNA.471-201ENST00000384312 102 ntBASIC0.89□□□□□ -2.27
MSH6P52701 RNU6-424P-201ENST00000384367 105 ntBASIC0.89□□□□□ -2.27
MSH6P52701 MIR562-201ENST00000384894 95 ntBASIC0.89□□□□□ -2.27
MSH6P52701 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
MSH6P52701 RNU6-700P-201ENST00000391043 107 ntBASIC0.89□□□□□ -2.27
MSH6P52701 MIR1277-201ENST00000408536 78 ntBASIC0.89□□□□□ -2.27
MSH6P52701 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.89□□□□□ -2.27
MSH6P52701 MTCYBP10-201ENST00000424905 650 ntBASIC0.89□□□□□ -2.27
MSH6P52701 UBE2V1P7-201ENST00000446395 340 ntBASIC0.89□□□□□ -2.27
MSH6P52701 UQCRBP2-201ENST00000447827 297 ntBASIC0.89□□□□□ -2.27
MSH6P52701 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.89□□□□□ -2.27
MSH6P52701 OR9P1P-201ENST00000496431 281 ntBASIC0.89□□□□□ -2.27
MSH6P52701 RNU6-1016P-201ENST00000516689 94 ntBASIC0.89□□□□□ -2.27
MSH6P52701 AC090049.2-201ENST00000550377 109 ntBASIC0.89□□□□□ -2.27
MSH6P52701 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms