Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RPL23AP91-201ENST00000569211 455 ntBASIC3.1□□□□□ -1.91
LIG3P49916 AL031274.2-201ENST00000599419 203 ntBASIC3.1□□□□□ -1.91
LIG3P49916 MIR6844-201ENST00000637122 62 ntBASIC3.1□□□□□ -1.91
LIG3P49916 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIG3P49916 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.09□□□□□ -1.91
LIG3P49916 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
LIG3P49916 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
LIG3P49916 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.09□□□□□ -1.91
LIG3P49916 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIG3P49916 Y_RNA.432-201ENST00000384087 111 ntBASIC3.09□□□□□ -1.91
LIG3P49916 RNU6-160P-201ENST00000384591 107 ntBASIC3.09□□□□□ -1.91
LIG3P49916 RNU6-768P-201ENST00000384683 107 ntBASIC3.09□□□□□ -1.91
LIG3P49916 SNORA40-201ENST00000388090 126 ntBASIC3.09□□□□□ -1.91
LIG3P49916 SNORD67-201ENST00000390833 111 ntBASIC3.09□□□□□ -1.91
LIG3P49916 EDDM3CP-201ENST00000415977 425 ntBASIC3.09□□□□□ -1.91
LIG3P49916 RNU1-131P-201ENST00000458943 161 ntBASIC3.09□□□□□ -1.91
LIG3P49916 S100A11P2-201ENST00000467589 312 ntBASIC3.09□□□□□ -1.91
LIG3P49916 RNA5SP272-201ENST00000516095 111 ntBASIC3.09□□□□□ -1.91
LIG3P49916 RNU7-99P-201ENST00000516271 62 ntBASIC3.09□□□□□ -1.91
LIG3P49916 AL359075.3-201ENST00000613288 217 ntBASIC3.09□□□□□ -1.91
LIG3P49916 AC100821.1-201ENST00000523153 2479 ntBASIC3.08□□□□□ -1.92
LIG3P49916 SNORA54-201ENST00000384281 123 ntBASIC3.08□□□□□ -1.92
LIG3P49916 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.08□□□□□ -1.92
LIG3P49916 AC092427.1-202ENST00000430569 476 ntBASIC3.08□□□□□ -1.92
LIG3P49916 RN7SL633P-201ENST00000488974 297 ntBASIC3.08□□□□□ -1.92
LIG3P49916 RNU6-1299P-201ENST00000516316 100 ntBASIC3.08□□□□□ -1.92
LIG3P49916 RNU6-62P-201ENST00000516526 102 ntBASIC3.08□□□□□ -1.92
LIG3P49916 RNU6-197P-201ENST00000516680 100 ntBASIC3.08□□□□□ -1.92
LIG3P49916 JPX_2.1-201ENST00000614161 69 ntBASIC3.08□□□□□ -1.92
LIG3P49916 uc_338.4-201ENST00000616635 176 ntBASIC3.08□□□□□ -1.92
LIG3P49916 MIR338-201ENST00000636369 67 ntBASIC3.08□□□□□ -1.92
LIG3P49916 ZNF702P-202ENST00000434269 1966 ntBASIC3.08□□□□□ -1.92
LIG3P49916 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.08□□□□□ -1.92
LIG3P49916 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIG3P49916 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.07□□□□□ -1.92
LIG3P49916 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
LIG3P49916 MIR22-201ENST00000362190 85 ntBASIC3.07□□□□□ -1.92
LIG3P49916 SNORA71.1-201ENST00000364523 117 ntBASIC3.07□□□□□ -1.92
LIG3P49916 RNU6-1072P-201ENST00000384703 107 ntBASIC3.07□□□□□ -1.92
LIG3P49916 RNU6-443P-201ENST00000384780 107 ntBASIC3.07□□□□□ -1.92
LIG3P49916 Y_RNA.621-201ENST00000411065 96 ntBASIC3.07□□□□□ -1.92
LIG3P49916 Z96811.1-201ENST00000445880 108 ntBASIC3.07□□□□□ -1.92
LIG3P49916 ATP5J2P3-201ENST00000451550 258 ntBASIC3.07□□□□□ -1.92
LIG3P49916 RN7SL636P-201ENST00000497504 294 ntBASIC3.07□□□□□ -1.92
LIG3P49916 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.07□□□□□ -1.92
LIG3P49916 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.07□□□□□ -1.92
LIG3P49916 MIR378D2-201ENST00000580636 98 ntBASIC3.07□□□□□ -1.92
LIG3P49916 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIG3P49916 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIG3P49916 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
LIG3P49916 Y_RNA.111-201ENST00000363248 100 ntBASIC3.06□□□□□ -1.92
LIG3P49916 SNORA75.5-201ENST00000391291 81 ntBASIC3.06□□□□□ -1.92
LIG3P49916 AC104389.3-201ENST00000445629 235 ntBASIC3.06□□□□□ -1.92
LIG3P49916 RN7SL297P-201ENST00000483161 293 ntBASIC3.06□□□□□ -1.92
LIG3P49916 RNU6-826P-201ENST00000516827 104 ntBASIC3.06□□□□□ -1.92
LIG3P49916 AL160236.1-201ENST00000556317 195 ntBASIC3.06□□□□□ -1.92
LIG3P49916 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.06□□□□□ -1.92
LIG3P49916 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
LIG3P49916 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.05□□□□□ -1.92
LIG3P49916 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.05□□□□□ -1.92
LIG3P49916 RNU6-1209P-201ENST00000363655 107 ntBASIC3.05□□□□□ -1.92
LIG3P49916 Y_RNA.796-201ENST00000364268 102 ntBASIC3.05□□□□□ -1.92
LIG3P49916 Y_RNA.799-201ENST00000364992 102 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RNU6-484P-201ENST00000384016 107 ntBASIC3.05□□□□□ -1.92
LIG3P49916 Y_RNA.420-201ENST00000384043 110 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RNU6-22P-201ENST00000384355 107 ntBASIC3.05□□□□□ -1.92
LIG3P49916 MIR515-2-201ENST00000384883 83 ntBASIC3.05□□□□□ -1.92
LIG3P49916 MIR515-1-201ENST00000384884 83 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RNA5SP467-201ENST00000391274 118 ntBASIC3.05□□□□□ -1.92
LIG3P49916 MIR1262-201ENST00000408276 93 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RNA5SP274-201ENST00000410484 108 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RNU2-51P-201ENST00000410708 197 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RN7SKP284-201ENST00000411002 343 ntBASIC3.05□□□□□ -1.92
LIG3P49916 AC018634.1-201ENST00000437554 401 ntBASIC3.05□□□□□ -1.92
LIG3P49916 SNORD11-201ENST00000459124 84 ntBASIC3.05□□□□□ -1.92
LIG3P49916 SNORD77.4-201ENST00000516158 81 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RNU1-142P-201ENST00000516682 145 ntBASIC3.05□□□□□ -1.92
LIG3P49916 RNU7-128P-201ENST00000517247 62 ntBASIC3.05□□□□□ -1.92
LIG3P49916 AC107016.2-201ENST00000547968 190 ntBASIC3.05□□□□□ -1.92
LIG3P49916 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
LIG3P49916 SNORD114-6-201ENST00000364393 72 ntBASIC3.04□□□□□ -1.92
LIG3P49916 RNU6-1180P-201ENST00000364935 107 ntBASIC3.04□□□□□ -1.92
LIG3P49916 RNU6-597P-201ENST00000365620 102 ntBASIC3.04□□□□□ -1.92
LIG3P49916 RNA5SP323-201ENST00000391094 133 ntBASIC3.04□□□□□ -1.92
LIG3P49916 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
LIG3P49916 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.04□□□□□ -1.92
LIG3P49916 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.04□□□□□ -1.92
LIG3P49916 MTND4LP9-201ENST00000427694 174 ntBASIC3.04□□□□□ -1.92
LIG3P49916 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.04□□□□□ -1.92
LIG3P49916 YWHAEP4-201ENST00000505390 198 ntBASIC3.04□□□□□ -1.92
LIG3P49916 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.04□□□□□ -1.92
LIG3P49916 RNU6-313P-201ENST00000516317 112 ntBASIC3.04□□□□□ -1.92
LIG3P49916 RNU6-479P-201ENST00000516348 105 ntBASIC3.04□□□□□ -1.92
LIG3P49916 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.04□□□□□ -1.92
LIG3P49916 AC091178.2-201ENST00000584401 117 ntBASIC3.04□□□□□ -1.92
LIG3P49916 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
LIG3P49916 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
LIG3P49916 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LIG3P49916 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.03□□□□□ -1.92
LIG3P49916 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms