Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU6-1143P-201ENST00000516125 104 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 RNU6-970P-201ENST00000516312 107 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 RNU6-948P-201ENST00000516374 107 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.72□□□□□ -2.13
HNF4AP41235 AL161670.1-201ENST00000554348 137 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 MIR4422-201ENST00000581938 83 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 AC022441.3-201ENST00000605737 136 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 MIR8081-201ENST00000611533 95 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 MIR8062-201ENST00000621515 85 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 snoZ196.1-201ENST00000625269 89 ntBASIC1.72□□□□□ -2.13
HNF4AP41235 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.72□□□□□ -2.13
HNF4AP41235 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.72□□□□□ -2.13
HNF4AP41235 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HNF4AP41235 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
HNF4AP41235 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
HNF4AP41235 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
HNF4AP41235 SNORD81.1-201ENST00000363064 77 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 Y_RNA.144-201ENST00000363521 113 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 SNORA72.2-201ENST00000365028 127 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 Y_RNA.396-201ENST00000383949 103 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 Y_RNA.446-201ENST00000384178 104 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU6-472P-201ENST00000384299 107 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU6-463P-201ENST00000384340 107 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU6-57P-201ENST00000411348 103 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 FTH1P12-201ENST00000432137 551 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.71□□□□□ -2.14
HNF4AP41235 HSPE1P25-201ENST00000455484 251 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU2-34P-201ENST00000516534 121 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU7-110P-201ENST00000516891 62 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU6-856P-201ENST00000516959 98 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU6-570P-201ENST00000517051 105 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 RNU2-12P-201ENST00000517216 168 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.71□□□□□ -2.14
HNF4AP41235 AC011373.1-201ENST00000607270 237 ntBASIC1.71□□□□□ -2.14
HNF4AP41235 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HNF4AP41235 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HNF4AP41235 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HNF4AP41235 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
HNF4AP41235 Y_RNA.84-201ENST00000363011 104 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 RNU6-196P-201ENST00000384315 107 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 RNU6-1235P-201ENST00000384559 107 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 Y_RNA.541-201ENST00000384640 113 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 U8.13-201ENST00000390842 128 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 RNU2-7P-201ENST00000410794 178 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 AC016909.1-201ENST00000415916 166 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 TOMM22P2-201ENST00000430735 237 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 AL121890.1-201ENST00000435457 205 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.7□□□□□ -2.14
HNF4AP41235 RNU6-498P-201ENST00000459468 107 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 RNU6-221P-201ENST00000459541 99 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 AC114982.1-201ENST00000469402 321 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 RNU6-496P-201ENST00000516145 99 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 RNU6-295P-201ENST00000516901 104 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 MIR6845-201ENST00000613182 61 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 7SK.10-201ENST00000621414 298 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 AC084768.2-201ENST00000622736 221 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 U6.115-201ENST00000636045 103 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 AC010615.1-201ENST00000594254 1764 ntBASIC1.7□□□□□ -2.14
HNF4AP41235 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
HNF4AP41235 RNU6-862P-201ENST00000362804 105 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 RNU6-1019P-201ENST00000364424 107 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 Y_RNA.243-201ENST00000364481 109 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 Y_RNA.331-201ENST00000365267 102 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 Y_RNA.483-201ENST00000384380 101 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 Y_RNA.581-201ENST00000391017 97 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 RNU2-54P-201ENST00000410299 190 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 AC060773.1-201ENST00000421698 310 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 AC099677.2-201ENST00000436385 175 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.69□□□□□ -2.14
HNF4AP41235 SEPT14P8-201ENST00000508026 178 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 AC025647.1-201ENST00000517879 253 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.69□□□□□ -2.14
HNF4AP41235 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.69□□□□□ -2.14
HNF4AP41235 DEFB122-202ENST00000569013 197 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 SNORD113-5-201ENST00000607261 78 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.69□□□□□ -2.14
HNF4AP41235 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.68□□□□□ -2.14
HNF4AP41235 Y_RNA.16-201ENST00000362421 102 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 Y_RNA.193-201ENST00000363979 102 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNU1-96P-201ENST00000364163 162 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNU6-713P-201ENST00000384761 107 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNU6-360P-201ENST00000390944 104 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 AL355796.1-201ENST00000406706 323 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNU6-1203P-201ENST00000410703 110 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.68□□□□□ -2.14
HNF4AP41235 HSPE1P9-201ENST00000440046 311 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 JTBP1-201ENST00000441314 247 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 AC069257.2-201ENST00000441819 155 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.68□□□□□ -2.14
HNF4AP41235 AC074290.1-201ENST00000448883 135 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 SNORD65B-201ENST00000459126 73 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNU6-436P-201ENST00000516171 114 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNU6-155P-201ENST00000516347 100 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 RNA5SP481-201ENST00000516814 122 ntBASIC1.68□□□□□ -2.14
HNF4AP41235 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HNF4AP41235 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.68□□□□□ -2.14
HNF4AP41235 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
HNF4AP41235 SNORD115-30-201ENST00000364117 82 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms