Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 Y_RNA.273-201ENST00000364703 102 ntBASIC2.63□□□□□ -1.99
MSX2P35548 RNU6-215P-201ENST00000365169 102 ntBASIC2.63□□□□□ -1.99
MSX2P35548 Y_RNA.353-201ENST00000365440 108 ntBASIC2.63□□□□□ -1.99
MSX2P35548 SNORD20-201ENST00000384550 80 ntBASIC2.63□□□□□ -1.99
MSX2P35548 RNU6-588P-201ENST00000410281 105 ntBASIC2.63□□□□□ -1.99
MSX2P35548 Y_RNA.622-201ENST00000411091 108 ntBASIC2.63□□□□□ -1.99
MSX2P35548 RNU6-965P-201ENST00000516721 96 ntBASIC2.63□□□□□ -1.99
MSX2P35548 AC004486.1-201ENST00000546846 233 ntBASIC2.63□□□□□ -1.99
MSX2P35548 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.63□□□□□ -1.99
MSX2P35548 AL162274.2-201ENST00000614406 332 ntBASIC2.63□□□□□ -1.99
MSX2P35548 AL449363.1-201ENST00000617815 186 ntBASIC2.63□□□□□ -1.99
MSX2P35548 TUG1_4.1-201ENST00000619464 181 ntBASIC2.63□□□□□ -1.99
MSX2P35548 AP001340.1-201ENST00000624405 217 ntBASIC2.63□□□□□ -1.99
MSX2P35548 SNORA71.1-201ENST00000364523 117 ntBASIC2.62□□□□□ -1.99
MSX2P35548 RNU6-80P-201ENST00000384195 107 ntBASIC2.62□□□□□ -1.99
MSX2P35548 Y_RNA.521-201ENST00000384560 114 ntBASIC2.62□□□□□ -1.99
MSX2P35548 RNA5SP496-201ENST00000391240 109 ntBASIC2.62□□□□□ -1.99
MSX2P35548 HMGN2P35-201ENST00000412164 270 ntBASIC2.62□□□□□ -1.99
MSX2P35548 AC003685.2-201ENST00000422795 395 ntBASIC2.62□□□□□ -1.99
MSX2P35548 HMGN2P18-201ENST00000450680 270 ntBASIC2.62□□□□□ -1.99
MSX2P35548 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.62□□□□□ -1.99
MSX2P35548 AC090515.1-201ENST00000465295 476 ntBASIC2.62□□□□□ -1.99
MSX2P35548 RN7SL504P-201ENST00000494496 287 ntBASIC2.62□□□□□ -1.99
MSX2P35548 AL031274.2-201ENST00000599419 203 ntBASIC2.62□□□□□ -1.99
MSX2P35548 AC013412.1-201ENST00000610687 192 ntBASIC2.62□□□□□ -1.99
MSX2P35548 MIR6852-201ENST00000621699 66 ntBASIC2.62□□□□□ -1.99
MSX2P35548 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
MSX2P35548 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
MSX2P35548 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
MSX2P35548 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.61□□□□□ -1.99
MSX2P35548 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
MSX2P35548 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
MSX2P35548 RNA5SP374-201ENST00000362939 125 ntBASIC2.61□□□□□ -1.99
MSX2P35548 RNU6-597P-201ENST00000365620 102 ntBASIC2.61□□□□□ -1.99
MSX2P35548 RNU6-1072P-201ENST00000384703 107 ntBASIC2.61□□□□□ -1.99
MSX2P35548 RNU6-443P-201ENST00000384780 107 ntBASIC2.61□□□□□ -1.99
MSX2P35548 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
MSX2P35548 RNA5SP210-201ENST00000391034 120 ntBASIC2.61□□□□□ -1.99
MSX2P35548 SNORA75.5-201ENST00000391291 81 ntBASIC2.61□□□□□ -1.99
MSX2P35548 AC008134.1-201ENST00000420943 193 ntBASIC2.61□□□□□ -1.99
MSX2P35548 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.61□□□□□ -1.99
MSX2P35548 RNU2-34P-201ENST00000516534 121 ntBASIC2.61□□□□□ -1.99
MSX2P35548 RNU6-826P-201ENST00000516827 104 ntBASIC2.61□□□□□ -1.99
MSX2P35548 PRELID2P1-201ENST00000552837 301 ntBASIC2.61□□□□□ -1.99
MSX2P35548 AC120024.3-201ENST00000603167 156 ntBASIC2.61□□□□□ -1.99
MSX2P35548 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.61□□□□□ -1.99
MSX2P35548 MIR5739-201ENST00000619803 80 ntBASIC2.61□□□□□ -1.99
MSX2P35548 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.6□□□□□ -1.99
MSX2P35548 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.6□□□□□ -1.99
MSX2P35548 RNU4-41P-201ENST00000364426 143 ntBASIC2.6□□□□□ -1.99
MSX2P35548 RNU6-1082P-201ENST00000364574 107 ntBASIC2.6□□□□□ -1.99
MSX2P35548 RNU6-1240P-201ENST00000365155 104 ntBASIC2.6□□□□□ -1.99
MSX2P35548 RNU6-484P-201ENST00000384016 107 ntBASIC2.6□□□□□ -1.99
MSX2P35548 Y_RNA.587-201ENST00000391210 103 ntBASIC2.6□□□□□ -1.99
MSX2P35548 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.6□□□□□ -1.99
MSX2P35548 SCGB1D5P-201ENST00000515134 247 ntBASIC2.6□□□□□ -1.99
MSX2P35548 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.6□□□□□ -1.99
MSX2P35548 AL359881.1-201ENST00000602916 267 ntBASIC2.6□□□□□ -1.99
MSX2P35548 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.6□□□□□ -1.99
MSX2P35548 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.6□□□□□ -1.99
MSX2P35548 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
MSX2P35548 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
MSX2P35548 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
MSX2P35548 RNU1-22P-201ENST00000363334 158 ntBASIC2.59□□□□□ -1.99
MSX2P35548 RNA5SP125-201ENST00000364843 120 ntBASIC2.59□□□□□ -1.99
MSX2P35548 RNU6-438P-201ENST00000365561 103 ntBASIC2.59□□□□□ -1.99
MSX2P35548 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.59□□□□□ -1.99
MSX2P35548 SNORA72-201ENST00000384339 132 ntBASIC2.59□□□□□ -1.99
MSX2P35548 Y_RNA.500-201ENST00000384466 111 ntBASIC2.59□□□□□ -1.99
MSX2P35548 MIR95-201ENST00000385072 81 ntBASIC2.59□□□□□ -1.99
MSX2P35548 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
MSX2P35548 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.59□□□□□ -1.99
MSX2P35548 MTCO1P44-201ENST00000441935 243 ntBASIC2.59□□□□□ -1.99
MSX2P35548 RPS27P22-201ENST00000478056 241 ntBASIC2.59□□□□□ -1.99
MSX2P35548 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.59□□□□□ -1.99
MSX2P35548 RNU4-57P-201ENST00000515980 135 ntBASIC2.59□□□□□ -1.99
MSX2P35548 RNU6-659P-201ENST00000516454 104 ntBASIC2.59□□□□□ -1.99
MSX2P35548 Y_RNA.686-201ENST00000516548 134 ntBASIC2.59□□□□□ -1.99
MSX2P35548 AP001328.1-201ENST00000528550 176 ntBASIC2.59□□□□□ -1.99
MSX2P35548 MIR378D2-201ENST00000580636 98 ntBASIC2.59□□□□□ -1.99
MSX2P35548 MIR3670-2-201ENST00000582974 65 ntBASIC2.59□□□□□ -1.99
MSX2P35548 MIR4325-201ENST00000583049 90 ntBASIC2.59□□□□□ -1.99
MSX2P35548 MIR3670-1-201ENST00000584160 65 ntBASIC2.59□□□□□ -1.99
MSX2P35548 MIR3670-3-201ENST00000584855 65 ntBASIC2.59□□□□□ -1.99
MSX2P35548 AL929325.1-201ENST00000603096 117 ntBASIC2.59□□□□□ -1.99
MSX2P35548 MIR3670-4-201ENST00000612260 65 ntBASIC2.59□□□□□ -1.99
MSX2P35548 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.59□□□□□ -1.99
MSX2P35548 AC006386.2-201ENST00000624491 75 ntBASIC2.59□□□□□ -1.99
MSX2P35548 AC012005.1-201ENST00000624575 75 ntBASIC2.59□□□□□ -1.99
MSX2P35548 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
MSX2P35548 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
MSX2P35548 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.58□□□□□ -2
MSX2P35548 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSX2P35548 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.58□□□□□ -2
MSX2P35548 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.58□□□□□ -2
MSX2P35548 MIR26A1-201ENST00000362205 77 ntBASIC2.58□□□□□ -2
MSX2P35548 RNU6-978P-201ENST00000364371 103 ntBASIC2.58□□□□□ -2
MSX2P35548 RNU6-546P-201ENST00000383991 107 ntBASIC2.58□□□□□ -2
MSX2P35548 MIR592-201ENST00000384959 97 ntBASIC2.58□□□□□ -2
MSX2P35548 AL512604.1-201ENST00000404812 257 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms