Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 HMGN2P5-201ENST00000436882 273 ntBASIC2.21□□□□□ -2.06
CIITAP33076 SNORD65B-201ENST00000459126 73 ntBASIC2.21□□□□□ -2.06
CIITAP33076 AC091959.1-201ENST00000495857 238 ntBASIC2.21□□□□□ -2.06
CIITAP33076 AC108210.2-201ENST00000503681 201 ntBASIC2.21□□□□□ -2.06
CIITAP33076 RNU6-191P-201ENST00000516295 94 ntBASIC2.21□□□□□ -2.06
CIITAP33076 RNU6-948P-201ENST00000516374 107 ntBASIC2.21□□□□□ -2.06
CIITAP33076 Y_RNA.676-201ENST00000516393 96 ntBASIC2.21□□□□□ -2.06
CIITAP33076 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.21□□□□□ -2.06
CIITAP33076 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.21□□□□□ -2.06
CIITAP33076 AC090425.1-201ENST00000610007 140 ntBASIC2.21□□□□□ -2.06
CIITAP33076 AC022202.1-201ENST00000613515 211 ntBASIC2.21□□□□□ -2.06
CIITAP33076 AL359851.1-201ENST00000569460 4997 ntBASIC2.2□□□□□ -2.06
CIITAP33076 SNORD27-201ENST00000363981 72 ntBASIC2.2□□□□□ -2.06
CIITAP33076 RNU6-740P-201ENST00000364734 105 ntBASIC2.2□□□□□ -2.06
CIITAP33076 Y_RNA.489-201ENST00000384410 101 ntBASIC2.2□□□□□ -2.06
CIITAP33076 SNORA53-201ENST00000391141 249 ntBASIC2.2□□□□□ -2.06
CIITAP33076 RNA5SP465-201ENST00000391195 109 ntBASIC2.2□□□□□ -2.06
CIITAP33076 MIR548H3-201ENST00000408771 118 ntBASIC2.2□□□□□ -2.06
CIITAP33076 RNU6-717P-201ENST00000459076 104 ntBASIC2.2□□□□□ -2.06
CIITAP33076 AC114982.1-201ENST00000469402 321 ntBASIC2.2□□□□□ -2.06
CIITAP33076 AC090255.1-201ENST00000495779 349 ntBASIC2.2□□□□□ -2.06
CIITAP33076 RNA5SP182-201ENST00000516064 82 ntBASIC2.2□□□□□ -2.06
CIITAP33076 RNU1-40P-201ENST00000516816 164 ntBASIC2.2□□□□□ -2.06
CIITAP33076 RNU1-97P-201ENST00000516872 164 ntBASIC2.2□□□□□ -2.06
CIITAP33076 RNU6-794P-201ENST00000517261 64 ntBASIC2.2□□□□□ -2.06
CIITAP33076 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.2□□□□□ -2.06
CIITAP33076 AC006380.1-201ENST00000603598 186 ntBASIC2.2□□□□□ -2.06
CIITAP33076 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CIITAP33076 UBE2WP1-201ENST00000362030 340 ntBASIC2.19□□□□□ -2.06
CIITAP33076 Y_RNA.44-201ENST00000362676 108 ntBASIC2.19□□□□□ -2.06
CIITAP33076 Y_RNA.76-201ENST00000362931 109 ntBASIC2.19□□□□□ -2.06
CIITAP33076 Y_RNA.99-201ENST00000363138 105 ntBASIC2.19□□□□□ -2.06
CIITAP33076 Y_RNA.124-201ENST00000363339 93 ntBASIC2.19□□□□□ -2.06
CIITAP33076 SNORA20.1-201ENST00000364790 130 ntBASIC2.19□□□□□ -2.06
CIITAP33076 Y_RNA.478-201ENST00000384358 107 ntBASIC2.19□□□□□ -2.06
CIITAP33076 MIR518A2-201ENST00000384966 87 ntBASIC2.19□□□□□ -2.06
CIITAP33076 U8.13-201ENST00000390842 128 ntBASIC2.19□□□□□ -2.06
CIITAP33076 RNU6-907P-201ENST00000390924 102 ntBASIC2.19□□□□□ -2.06
CIITAP33076 RNU2-61P-201ENST00000411069 191 ntBASIC2.19□□□□□ -2.06
CIITAP33076 AL357134.1-201ENST00000445848 426 ntBASIC2.19□□□□□ -2.06
CIITAP33076 SNORA27.4-201ENST00000516650 95 ntBASIC2.19□□□□□ -2.06
CIITAP33076 SNRPGP19-201ENST00000603826 189 ntBASIC2.19□□□□□ -2.06
CIITAP33076 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.19□□□□□ -2.06
CIITAP33076 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CIITAP33076 Y_RNA.172-201ENST00000363765 102 ntBASIC2.18□□□□□ -2.06
CIITAP33076 Y_RNA.217-201ENST00000364214 105 ntBASIC2.18□□□□□ -2.06
CIITAP33076 Y_RNA.275-201ENST00000364726 110 ntBASIC2.18□□□□□ -2.06
CIITAP33076 RNU6-338P-201ENST00000383888 105 ntBASIC2.18□□□□□ -2.06
CIITAP33076 RNU4-52P-201ENST00000384209 138 ntBASIC2.18□□□□□ -2.06
CIITAP33076 SNORA20B-201ENST00000384220 132 ntBASIC2.18□□□□□ -2.06
CIITAP33076 AC060773.1-201ENST00000421698 310 ntBASIC2.18□□□□□ -2.06
CIITAP33076 MTND2P29-201ENST00000438595 412 ntBASIC2.18□□□□□ -2.06
CIITAP33076 Y_RNA.641-201ENST00000459414 105 ntBASIC2.18□□□□□ -2.06
CIITAP33076 RNU2-34P-201ENST00000516534 121 ntBASIC2.18□□□□□ -2.06
CIITAP33076 RNU6-856P-201ENST00000516959 98 ntBASIC2.18□□□□□ -2.06
CIITAP33076 AC002984.1-201ENST00000591692 448 ntBASIC2.18□□□□□ -2.06
CIITAP33076 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CIITAP33076 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.17□□□□□ -2.06
CIITAP33076 Y_RNA.117-201ENST00000363294 101 ntBASIC2.17□□□□□ -2.06
CIITAP33076 RNU6-1164P-201ENST00000364428 107 ntBASIC2.17□□□□□ -2.06
CIITAP33076 Y_RNA.257-201ENST00000364596 102 ntBASIC2.17□□□□□ -2.06
CIITAP33076 SNORA16B-201ENST00000364674 135 ntBASIC2.17□□□□□ -2.06
CIITAP33076 Y_RNA.269-201ENST00000364685 89 ntBASIC2.17□□□□□ -2.06
CIITAP33076 RNU6-662P-201ENST00000384253 104 ntBASIC2.17□□□□□ -2.06
CIITAP33076 MIR17-201ENST00000385012 84 ntBASIC2.17□□□□□ -2.06
CIITAP33076 AL512604.1-201ENST00000404812 257 ntBASIC2.17□□□□□ -2.06
CIITAP33076 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.17□□□□□ -2.06
CIITAP33076 RNA5SP233-201ENST00000459153 113 ntBASIC2.17□□□□□ -2.06
CIITAP33076 MIR514B-201ENST00000516774 80 ntBASIC2.17□□□□□ -2.06
CIITAP33076 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.17□□□□□ -2.06
CIITAP33076 AC011921.3-201ENST00000605540 361 ntBASIC2.17□□□□□ -2.06
CIITAP33076 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.17□□□□□ -2.06
CIITAP33076 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.16□□□□□ -2.06
CIITAP33076 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
CIITAP33076 AC068700.1-201ENST00000565862 3754 ntBASIC2.16□□□□□ -2.06
CIITAP33076 SNORA25.1-201ENST00000362326 128 ntBASIC2.16□□□□□ -2.06
CIITAP33076 Y_RNA.54-201ENST00000362766 105 ntBASIC2.16□□□□□ -2.06
CIITAP33076 Y_RNA.122-201ENST00000363331 96 ntBASIC2.16□□□□□ -2.06
CIITAP33076 RNU6-324P-201ENST00000363957 106 ntBASIC2.16□□□□□ -2.06
CIITAP33076 RNU6-801P-201ENST00000364087 105 ntBASIC2.16□□□□□ -2.06
CIITAP33076 RNY1-201ENST00000364228 113 ntBASIC2.16□□□□□ -2.06
CIITAP33076 AC019129.1-201ENST00000403786 261 ntBASIC2.16□□□□□ -2.06
CIITAP33076 MIR1289-2-201ENST00000408360 111 ntBASIC2.16□□□□□ -2.06
CIITAP33076 RNA5SP338-201ENST00000410495 85 ntBASIC2.16□□□□□ -2.06
CIITAP33076 AC074290.1-201ENST00000448883 135 ntBASIC2.16□□□□□ -2.06
CIITAP33076 AC010598.1-201ENST00000510378 103 ntBASIC2.16□□□□□ -2.06
CIITAP33076 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.16□□□□□ -2.06
CIITAP33076 AC015712.3-201ENST00000559380 164 ntBASIC2.16□□□□□ -2.06
CIITAP33076 MIR4282-201ENST00000583613 67 ntBASIC2.16□□□□□ -2.06
CIITAP33076 AC141273.2-201ENST00000618989 130 ntBASIC2.16□□□□□ -2.06
CIITAP33076 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.16□□□□□ -2.06
CIITAP33076 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
CIITAP33076 SNORD114-7-201ENST00000362520 77 ntBASIC2.15□□□□□ -2.07
CIITAP33076 SNORA27.1-201ENST00000362604 124 ntBASIC2.15□□□□□ -2.07
CIITAP33076 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CIITAP33076 RNU2-40P-201ENST00000410833 196 ntBASIC2.15□□□□□ -2.07
CIITAP33076 Y_RNA.637-201ENST00000459424 114 ntBASIC2.15□□□□□ -2.07
CIITAP33076 AC107393.1-201ENST00000512403 346 ntBASIC2.15□□□□□ -2.07
CIITAP33076 MIR4287-201ENST00000579398 78 ntBASIC2.15□□□□□ -2.07
CIITAP33076 BX284668.6-201ENST00000606899 438 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms