Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU6-1096P-201ENST00000517089 102 ntBASIC1.3□□□□□ -2.2
BDNFP23560 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.3□□□□□ -2.2
BDNFP23560 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.3□□□□□ -2.2
BDNFP23560 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
BDNFP23560 Y_RNA.243-201ENST00000364481 109 ntBASIC1.29□□□□□ -2.2
BDNFP23560 SNORA80D-201ENST00000384488 135 ntBASIC1.29□□□□□ -2.2
BDNFP23560 SNORD41-201ENST00000386967 70 ntBASIC1.29□□□□□ -2.2
BDNFP23560 Y_RNA.635-201ENST00000459041 101 ntBASIC1.29□□□□□ -2.2
BDNFP23560 CYCTP-201ENST00000504253 315 ntBASIC1.29□□□□□ -2.2
BDNFP23560 SCARNA16.2-201ENST00000516520 172 ntBASIC1.29□□□□□ -2.2
BDNFP23560 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
BDNFP23560 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.29□□□□□ -2.2
BDNFP23560 AC027279.3-201ENST00000625055 122 ntBASIC1.29□□□□□ -2.2
BDNFP23560 RNU6-874P-201ENST00000362390 105 ntBASIC1.28□□□□□ -2.2
BDNFP23560 RNU6-833P-201ENST00000363486 107 ntBASIC1.28□□□□□ -2.2
BDNFP23560 Y_RNA.577-201ENST00000384794 101 ntBASIC1.28□□□□□ -2.2
BDNFP23560 MIR200A-201ENST00000384875 90 ntBASIC1.28□□□□□ -2.2
BDNFP23560 SNORA69.1-201ENST00000390904 137 ntBASIC1.28□□□□□ -2.2
BDNFP23560 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.28□□□□□ -2.2
BDNFP23560 U8.19-201ENST00000459095 133 ntBASIC1.28□□□□□ -2.2
BDNFP23560 U8.22-201ENST00000459141 133 ntBASIC1.28□□□□□ -2.2
BDNFP23560 AC048334.1-201ENST00000477975 159 ntBASIC1.28□□□□□ -2.2
BDNFP23560 HMGN1P7-201ENST00000491722 313 ntBASIC1.28□□□□□ -2.2
BDNFP23560 AC093852.1-201ENST00000503587 266 ntBASIC1.28□□□□□ -2.2
BDNFP23560 RNU7-4P-201ENST00000516961 62 ntBASIC1.28□□□□□ -2.2
BDNFP23560 AC144568.1-201ENST00000520139 137 ntBASIC1.28□□□□□ -2.2
BDNFP23560 AC068790.6-201ENST00000602558 258 ntBASIC1.28□□□□□ -2.2
BDNFP23560 AC005592.1-201ENST00000566527 1640 ntBASIC1.28□□□□□ -2.2
BDNFP23560 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
BDNFP23560 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
BDNFP23560 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
BDNFP23560 RNU6-1301P-201ENST00000362724 104 ntBASIC1.27□□□□□ -2.21
BDNFP23560 RNU6-117P-201ENST00000365415 107 ntBASIC1.27□□□□□ -2.21
BDNFP23560 RNU6-318P-201ENST00000384283 103 ntBASIC1.27□□□□□ -2.21
BDNFP23560 MTND4P28-201ENST00000426217 387 ntBASIC1.27□□□□□ -2.21
BDNFP23560 RNU6-917P-201ENST00000516294 104 ntBASIC1.27□□□□□ -2.21
BDNFP23560 RNU7-30P-201ENST00000516835 62 ntBASIC1.27□□□□□ -2.21
BDNFP23560 SNORD114-24-201ENST00000365029 72 ntBASIC1.26□□□□□ -2.21
BDNFP23560 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.26□□□□□ -2.21
BDNFP23560 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.26□□□□□ -2.21
BDNFP23560 AC022616.4-201ENST00000522985 181 ntBASIC1.26□□□□□ -2.21
BDNFP23560 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.26□□□□□ -2.21
BDNFP23560 U6atac.1-201ENST00000616025 117 ntBASIC1.26□□□□□ -2.21
BDNFP23560 MIR8070-201ENST00000616510 88 ntBASIC1.26□□□□□ -2.21
BDNFP23560 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.25□□□□□ -2.21
BDNFP23560 Y_RNA.166-201ENST00000363730 102 ntBASIC1.25□□□□□ -2.21
BDNFP23560 Y_RNA.238-201ENST00000364441 102 ntBASIC1.25□□□□□ -2.21
BDNFP23560 Y_RNA.404-201ENST00000383978 102 ntBASIC1.25□□□□□ -2.21
BDNFP23560 RNU6-163P-201ENST00000384396 106 ntBASIC1.25□□□□□ -2.21
BDNFP23560 MRPL35P3-201ENST00000421557 364 ntBASIC1.25□□□□□ -2.21
BDNFP23560 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.25□□□□□ -2.21
BDNFP23560 FCF1P4-201ENST00000448326 183 ntBASIC1.25□□□□□ -2.21
BDNFP23560 FGF7P6-202ENST00000451282 293 ntBASIC1.25□□□□□ -2.21
BDNFP23560 ELOCP24-201ENST00000456370 334 ntBASIC1.25□□□□□ -2.21
BDNFP23560 AC090821.2-201ENST00000523552 176 ntBASIC1.25□□□□□ -2.21
BDNFP23560 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.25□□□□□ -2.21
BDNFP23560 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.25□□□□□ -2.21
BDNFP23560 MIR5690-201ENST00000583739 73 ntBASIC1.25□□□□□ -2.21
BDNFP23560 MIR1244-1-201ENST00000612829 85 ntBASIC1.25□□□□□ -2.21
BDNFP23560 MIR1244-3-201ENST00000635744 85 ntBASIC1.25□□□□□ -2.21
BDNFP23560 MIR1244-2-201ENST00000636449 85 ntBASIC1.25□□□□□ -2.21
BDNFP23560 AL669831.3-213ENST00000636676 183 ntBASIC1.25□□□□□ -2.21
BDNFP23560 MIR1244-4-202ENST00000636813 85 ntBASIC1.25□□□□□ -2.21
BDNFP23560 RNU6-454P-201ENST00000364292 107 ntBASIC1.24□□□□□ -2.21
BDNFP23560 MIR452-201ENST00000385020 85 ntBASIC1.24□□□□□ -2.21
BDNFP23560 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.24□□□□□ -2.21
BDNFP23560 POLR2J4-204ENST00000418424 324 ntBASIC1.24□□□□□ -2.21
BDNFP23560 AL591704.2-201ENST00000421658 181 ntBASIC1.24□□□□□ -2.21
BDNFP23560 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.24□□□□□ -2.21
BDNFP23560 AC104332.1-201ENST00000440471 797 ntBASIC1.24□□□□□ -2.21
BDNFP23560 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.24□□□□□ -2.21
BDNFP23560 AC093850.1-201ENST00000454121 251 ntBASIC1.24□□□□□ -2.21
BDNFP23560 SNORD79.1-201ENST00000516069 84 ntBASIC1.24□□□□□ -2.21
BDNFP23560 AC120024.3-201ENST00000603167 156 ntBASIC1.24□□□□□ -2.21
BDNFP23560 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.24□□□□□ -2.21
BDNFP23560 AC133104.2-201ENST00000615272 193 ntBASIC1.24□□□□□ -2.21
BDNFP23560 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
BDNFP23560 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
BDNFP23560 RNU6-99P-201ENST00000364721 107 ntBASIC1.23□□□□□ -2.21
BDNFP23560 Y_RNA.621-201ENST00000411065 96 ntBASIC1.23□□□□□ -2.21
BDNFP23560 MRPS18CP6-201ENST00000423587 223 ntBASIC1.23□□□□□ -2.21
BDNFP23560 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.23□□□□□ -2.21
BDNFP23560 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.23□□□□□ -2.21
BDNFP23560 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.23□□□□□ -2.21
BDNFP23560 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.23□□□□□ -2.21
BDNFP23560 RNU6-408P-201ENST00000515910 100 ntBASIC1.23□□□□□ -2.21
BDNFP23560 AP002001.1-203ENST00000534002 267 ntBASIC1.23□□□□□ -2.21
BDNFP23560 AL117336.2-201ENST00000602435 335 ntBASIC1.23□□□□□ -2.21
BDNFP23560 AC025253.1-201ENST00000613623 543 ntBASIC1.23□□□□□ -2.21
BDNFP23560 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
BDNFP23560 MIRLET7C-201ENST00000362160 84 ntBASIC1.22□□□□□ -2.21
BDNFP23560 RNU4-41P-201ENST00000364426 143 ntBASIC1.22□□□□□ -2.21
BDNFP23560 MIR15B-201ENST00000385045 98 ntBASIC1.22□□□□□ -2.21
BDNFP23560 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.22□□□□□ -2.21
BDNFP23560 AL162725.1-201ENST00000435405 301 ntBASIC1.22□□□□□ -2.21
BDNFP23560 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.22□□□□□ -2.21
BDNFP23560 FAM106DP-201ENST00000586416 501 ntBASIC1.22□□□□□ -2.21
BDNFP23560 AL050343.2-201ENST00000607338 280 ntBASIC1.22□□□□□ -2.21
BDNFP23560 AC004467.1-201ENST00000615678 330 ntBASIC1.22□□□□□ -2.21
BDNFP23560 RNU6-845P-201ENST00000362578 103 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms