Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-120P-201ENST00000516077 103 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNU6-559P-201ENST00000516151 98 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNU6-277P-201ENST00000516272 106 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNU7-172P-201ENST00000517125 64 ntBASIC1.22□□□□□ -2.21
SDC3O75056 AC027419.1-201ENST00000522976 328 ntBASIC1.22□□□□□ -2.21
SDC3O75056 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
SDC3O75056 AC073413.2-201ENST00000604332 360 ntBASIC1.22□□□□□ -2.21
SDC3O75056 AC133104.2-201ENST00000615272 193 ntBASIC1.22□□□□□ -2.21
SDC3O75056 MIR6734-201ENST00000621166 68 ntBASIC1.22□□□□□ -2.21
SDC3O75056 MIR6079-201ENST00000635807 62 ntBASIC1.22□□□□□ -2.21
SDC3O75056 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SDC3O75056 Y_RNA.243-201ENST00000364481 109 ntBASIC1.21□□□□□ -2.22
SDC3O75056 SNORA25.8-201ENST00000364831 128 ntBASIC1.21□□□□□ -2.22
SDC3O75056 Y_RNA.361-201ENST00000365515 120 ntBASIC1.21□□□□□ -2.22
SDC3O75056 Y_RNA.387-201ENST00000383918 102 ntBASIC1.21□□□□□ -2.22
SDC3O75056 RNU6-1297P-201ENST00000384415 104 ntBASIC1.21□□□□□ -2.22
SDC3O75056 MIR873-201ENST00000401120 77 ntBASIC1.21□□□□□ -2.22
SDC3O75056 AC018865.2-201ENST00000423631 129 ntBASIC1.21□□□□□ -2.22
SDC3O75056 MTCO3P10-201ENST00000455912 772 ntBASIC1.21□□□□□ -2.22
SDC3O75056 AC144568.1-201ENST00000520139 137 ntBASIC1.21□□□□□ -2.22
SDC3O75056 RAB11AP2-201ENST00000545905 639 ntBASIC1.21□□□□□ -2.22
SDC3O75056 AC011604.1-201ENST00000545978 196 ntBASIC1.21□□□□□ -2.22
SDC3O75056 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.21□□□□□ -2.22
SDC3O75056 MIR8065-201ENST00000620577 100 ntBASIC1.21□□□□□ -2.22
SDC3O75056 AL513423.1-201ENST00000621695 132 ntBASIC1.21□□□□□ -2.22
SDC3O75056 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SDC3O75056 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.2□□□□□ -2.22
SDC3O75056 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.2□□□□□ -2.22
SDC3O75056 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.2□□□□□ -2.22
SDC3O75056 AC015922.2-201ENST00000435593 184 ntBASIC1.2□□□□□ -2.22
SDC3O75056 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.2□□□□□ -2.22
SDC3O75056 AL137792.2-201ENST00000443484 235 ntBASIC1.2□□□□□ -2.22
SDC3O75056 RPS29P29-201ENST00000456396 171 ntBASIC1.2□□□□□ -2.22
SDC3O75056 SUMO2P16-201ENST00000519475 264 ntBASIC1.2□□□□□ -2.22
SDC3O75056 AL512310.8-201ENST00000550183 120 ntBASIC1.2□□□□□ -2.22
SDC3O75056 RPL21P9-201ENST00000556149 474 ntBASIC1.2□□□□□ -2.22
SDC3O75056 AC091178.2-201ENST00000584401 117 ntBASIC1.2□□□□□ -2.22
SDC3O75056 AC073349.3-201ENST00000617616 186 ntBASIC1.2□□□□□ -2.22
SDC3O75056 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
SDC3O75056 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.2□□□□□ -2.22
SDC3O75056 SNORA72.1-201ENST00000363485 129 ntBASIC1.19□□□□□ -2.22
SDC3O75056 RNY3P4-201ENST00000384428 101 ntBASIC1.19□□□□□ -2.22
SDC3O75056 FGF7P4-201ENST00000509595 295 ntBASIC1.19□□□□□ -2.22
SDC3O75056 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.19□□□□□ -2.22
SDC3O75056 RNU6-911P-201ENST00000516523 104 ntBASIC1.19□□□□□ -2.22
SDC3O75056 RNU6-341P-201ENST00000516973 96 ntBASIC1.19□□□□□ -2.22
SDC3O75056 SNORA28-201ENST00000606769 126 ntBASIC1.19□□□□□ -2.22
SDC3O75056 AC091812.1-201ENST00000432235 1948 ntBASIC1.19□□□□□ -2.22
SDC3O75056 RNA5SP327-201ENST00000362494 101 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RNU6-490P-201ENST00000362985 107 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RNU6-407P-201ENST00000365280 104 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RNU6-117P-201ENST00000365415 107 ntBASIC1.18□□□□□ -2.22
SDC3O75056 MIR559-201ENST00000385188 96 ntBASIC1.18□□□□□ -2.22
SDC3O75056 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.18□□□□□ -2.22
SDC3O75056 RPL30P15-201ENST00000457129 321 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RPL39P38-201ENST00000467018 153 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RNU6-1278P-201ENST00000516130 107 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RN7SKP88-201ENST00000516847 250 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RNU2-12P-201ENST00000517216 168 ntBASIC1.18□□□□□ -2.22
SDC3O75056 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.18□□□□□ -2.22
SDC3O75056 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.18□□□□□ -2.22
SDC3O75056 AC005730.3-201ENST00000583067 366 ntBASIC1.18□□□□□ -2.22
SDC3O75056 AL132765.2-201ENST00000610812 351 ntBASIC1.18□□□□□ -2.22
SDC3O75056 AL021879.1-201ENST00000611756 288 ntBASIC1.18□□□□□ -2.22
SDC3O75056 7SK.8-201ENST00000612110 250 ntBASIC1.18□□□□□ -2.22
SDC3O75056 7SK.11-201ENST00000615477 250 ntBASIC1.18□□□□□ -2.22
SDC3O75056 RMST_2.1-201ENST00000617263 136 ntBASIC1.18□□□□□ -2.22
SDC3O75056 7SK.13-201ENST00000622040 250 ntBASIC1.18□□□□□ -2.22
SDC3O75056 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
SDC3O75056 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
SDC3O75056 Y_RNA.384-201ENST00000383909 102 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNU6-42P-201ENST00000384165 107 ntBASIC1.17□□□□□ -2.22
SDC3O75056 SNORD116-29-201ENST00000384516 83 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNU6-939P-201ENST00000384634 107 ntBASIC1.17□□□□□ -2.22
SDC3O75056 MIR660-201ENST00000385235 97 ntBASIC1.17□□□□□ -2.22
SDC3O75056 MIR758-201ENST00000390227 88 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNY4P36-201ENST00000391116 96 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNU5A-5P-201ENST00000411054 116 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNU6-1304P-201ENST00000411374 106 ntBASIC1.17□□□□□ -2.22
SDC3O75056 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC3O75056 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC3O75056 AC099799.1-201ENST00000439809 192 ntBASIC1.17□□□□□ -2.22
SDC3O75056 FCF1P4-201ENST00000448326 183 ntBASIC1.17□□□□□ -2.22
SDC3O75056 AC091021.1-201ENST00000468051 388 ntBASIC1.17□□□□□ -2.22
SDC3O75056 AC105758.1-201ENST00000506038 399 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNU6-408P-201ENST00000515910 100 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNA5SP220-201ENST00000516298 104 ntBASIC1.17□□□□□ -2.22
SDC3O75056 RNU7-28P-201ENST00000516759 62 ntBASIC1.17□□□□□ -2.22
SDC3O75056 AC068338.1-201ENST00000565567 176 ntBASIC1.17□□□□□ -2.22
SDC3O75056 AC127459.3-201ENST00000624328 466 ntBASIC1.17□□□□□ -2.22
SDC3O75056 AC138305.3-201ENST00000624988 240 ntBASIC1.17□□□□□ -2.22
SDC3O75056 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.16□□□□□ -2.22
SDC3O75056 Y_RNA.70-201ENST00000362886 110 ntBASIC1.16□□□□□ -2.22
SDC3O75056 RNU6-961P-201ENST00000363893 105 ntBASIC1.16□□□□□ -2.22
SDC3O75056 Y_RNA.259-201ENST00000364619 101 ntBASIC1.16□□□□□ -2.22
SDC3O75056 MIR520E-201ENST00000384867 87 ntBASIC1.16□□□□□ -2.22
SDC3O75056 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
SDC3O75056 MRPS18CP6-201ENST00000423587 223 ntBASIC1.16□□□□□ -2.22
SDC3O75056 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.16□□□□□ -2.22
SDC3O75056 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 201.7 ms