Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 RNU6-1094P-201ENST00000362416 104 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 SNORA37-201ENST00000384504 129 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 SNORA80E-201ENST00000384744 137 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 RNA5SP467-201ENST00000391274 118 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 AC123900.1-201ENST00000420390 96 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 KRTAP19-11P-201ENST00000439851 104 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 MIR1270-201ENST00000459320 83 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 AP000873.1-201ENST00000463987 400 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 PPIAP15-201ENST00000479662 484 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 RNU6-1258P-201ENST00000516911 111 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 AC025627.2-201ENST00000576220 160 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 AC068724.3-201ENST00000625906 87 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 AL161912.2-201ENST00000565707 3007 ntBASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VPS9D1Q9Y2B5 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 SNORD38.1-201ENST00000363863 68 ntBASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 RNU6-129P-201ENST00000391022 107 ntBASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 AC026402.1-201ENST00000513642 170 ntBASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 RNU1-142P-201ENST00000516682 145 ntBASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 MIR3939-201ENST00000582614 106 ntBASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 MAPK10-253ENST00000641010 4072 ntBASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
VPS9D1Q9Y2B5 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 RNA5SP167-201ENST00000365461 116 ntBASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 Y_RNA.470-201ENST00000384307 117 ntBASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 AL445685.2-201ENST00000422551 342 ntBASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 UBL5P1-201ENST00000507979 193 ntBASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 MIR3138-201ENST00000585238 82 ntBASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 AC002076.2-201ENST00000617362 122 ntBASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 MIR7151-201ENST00000617477 60 ntBASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS9D1Q9Y2B5 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 AL135938.1-201ENST00000443141 297 ntBASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 RNU7-94P-201ENST00000459576 63 ntBASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 uc_338.32-201ENST00000615087 172 ntBASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 U6.108-201ENST00000637764 58 ntBASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 AP001486.2-201ENST00000561652 5113 ntBASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS9D1Q9Y2B5 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-1244P-201ENST00000363614 108 ntBASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 MIR1193-201ENST00000408109 78 ntBASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 RNA5SP306-201ENST00000411087 107 ntBASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 SEPT14P17-201ENST00000617978 177 ntBASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS9D1Q9Y2B5 IPO8P1-201ENST00000455509 3109 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 Y_RNA.332-201ENST00000365271 113 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-1319P-201ENST00000390855 104 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-747P-201ENST00000390928 104 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-241P-201ENST00000391148 104 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-177P-201ENST00000411257 104 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RPS26P15-201ENST00000488067 348 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RN7SKP18-201ENST00000516005 275 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RPPH1-2P-201ENST00000516688 293 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 IGHVIII-5-1-201ENST00000523059 99 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 CYCSP29-201ENST00000533731 318 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 MIR3152-201ENST00000579801 74 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 MIR6716-201ENST00000613413 80 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 AL591424.2-201ENST00000617023 128 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 Y_RNA.788-201ENST00000622394 112 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 AC096644.4-201ENST00000563417 2912 ntBASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms