Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AC011604.1-201ENST00000545978 196 ntBASIC4.02□□□□□ -1.77
ZC3H4Q9UPT8 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC4.02□□□□□ -1.77
ZC3H4Q9UPT8 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
ZC3H4Q9UPT8 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
ZC3H4Q9UPT8 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 MIR450A1-201ENST00000362262 91 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.52-201ENST00000362760 96 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 RNU1-22P-201ENST00000363334 158 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 RNU6-743P-201ENST00000364151 106 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 SNORD11-201ENST00000459124 84 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.651-201ENST00000459380 103 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 AC091826.1-201ENST00000514065 313 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 AC097462.1-201ENST00000514125 324 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 NDUFA5P6-201ENST00000542110 379 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 GTF3AP2-201ENST00000557014 266 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 AC091178.2-201ENST00000584401 117 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 ELOCP29-201ENST00000588193 334 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 AL022345.2-201ENST00000606307 135 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 AC002064.3-201ENST00000623448 346 ntBASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC4.01□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.346-201ENST00000365385 112 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 RNA5SP127-201ENST00000411051 133 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC4□□□□□ -1.77
ZC3H4Q9UPT8 AC245102.2-201ENST00000448956 180 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 OR9P1P-201ENST00000496431 281 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 AC008885.1-201ENST00000514930 301 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 RNA5SP490-201ENST00000517141 136 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC4□□□□□ -1.77
ZC3H4Q9UPT8 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC4□□□□□ -1.77
ZC3H4Q9UPT8 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4□□□□□ -1.77
ZC3H4Q9UPT8 AC025166.1-201ENST00000612411 163 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC4□□□□□ -1.77
ZC3H4Q9UPT8 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
ZC3H4Q9UPT8 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
ZC3H4Q9UPT8 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.796-201ENST00000364268 102 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 RNU6-1164P-201ENST00000364428 107 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.799-201ENST00000364992 102 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 MIR1253-201ENST00000408273 105 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.617-201ENST00000410920 90 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 RN7SKP19-201ENST00000516016 252 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 AC097639.2-201ENST00000603159 172 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 GABRG2-229ENST00000641017 3628 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 AL136360.1-201ENST00000503377 1900 ntBASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ZC3H4Q9UPT8 RNU4-82P-201ENST00000362443 140 ntBASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 AL031737.1-201ENST00000450125 223 ntBASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 MIR4662B-201ENST00000579498 81 ntBASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
ZC3H4Q9UPT8 RN7SKP220-201ENST00000410611 288 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 HMGN2P18-201ENST00000450680 270 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 UBL5P3-201ENST00000475112 231 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 RNU6-365P-201ENST00000517113 106 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 RNU6-537P-201ENST00000517277 103 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 AC026333.2-201ENST00000542164 106 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 MIR4425-201ENST00000580572 84 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 uc_338.28-201ENST00000612082 187 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
ZC3H4Q9UPT8 RNA5SP42-201ENST00000364278 115 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 SNORA54-201ENST00000384281 123 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.486-201ENST00000384398 107 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 Y_RNA.495-201ENST00000384435 112 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 MIR218-1-201ENST00000384999 110 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 MIR1263-201ENST00000408324 86 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 AL513477.1-202ENST00000417061 214 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 MTATP6P21-201ENST00000440681 189 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 AC096725.1-201ENST00000514266 313 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 RNU2-34P-201ENST00000516534 121 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 RNU6-126P-201ENST00000516685 103 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 MIR622-201ENST00000638396 96 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 AC009487.4-201ENST00000624969 3585 ntBASIC3.96□□□□□ -1.77
ZC3H4Q9UPT8 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
ZC3H4Q9UPT8 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
ZC3H4Q9UPT8 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.96□□□□□ -1.78
ZC3H4Q9UPT8 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
ZC3H4Q9UPT8 FAM35CP-201ENST00000554755 2470 ntBASIC3.96□□□□□ -1.78
ZC3H4Q9UPT8 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.96□□□□□ -1.78
ZC3H4Q9UPT8 Y_RNA.116-201ENST00000363292 103 ntBASIC3.95□□□□□ -1.78
ZC3H4Q9UPT8 RNU6-32P-201ENST00000383948 107 ntBASIC3.95□□□□□ -1.78
ZC3H4Q9UPT8 RNU6-13P-201ENST00000384248 107 ntBASIC3.95□□□□□ -1.78
ZC3H4Q9UPT8 RNU6-12P-201ENST00000384604 107 ntBASIC3.95□□□□□ -1.78
ZC3H4Q9UPT8 RNU6-41P-201ENST00000384741 107 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms