Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR222-201ENST00000384992 110 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 MIR653-201ENST00000385279 96 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 RNA5SP482-201ENST00000391269 118 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 AL451046.2-201ENST00000403074 277 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 RPL39P39-201ENST00000455840 151 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 U8.22-201ENST00000459141 133 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 MTND4P17-201ENST00000470444 350 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 RNU6-341P-201ENST00000516973 96 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 AC005899.2-201ENST00000584353 90 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 AL357075.2-201ENST00000614906 189 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 AC092794.2-201ENST00000620933 563 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 AC073544.1-201ENST00000600110 1595 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 RNU6-845P-201ENST00000362578 103 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 Y_RNA.265-201ENST00000364677 108 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 RNU6-1054P-201ENST00000411293 104 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 STAG3L5P-204ENST00000443759 179 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 AC092991.1-201ENST00000477176 376 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 TRMT112P2-201ENST00000512910 132 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 RNU6-307P-201ENST00000516743 106 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 MIR6078-201ENST00000611069 100 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 MIR1244-1-201ENST00000612829 85 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 AC104260.1-201ENST00000616660 539 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 MIR1244-3-201ENST00000635744 85 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 MIR1244-2-201ENST00000636449 85 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 MIR1244-4-202ENST00000636813 85 ntBASIC1.64□□□□□ -2.15
CHMP4AQ9BY43 MIR410-201ENST00000362222 80 ntBASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 SNORA2.2-201ENST00000365473 135 ntBASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 Y_RNA.498-201ENST00000384460 102 ntBASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 RNU6-321P-201ENST00000410912 106 ntBASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 AL669831.3-213ENST00000636676 183 ntBASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 AC068647.2-201ENST00000637380 353 ntBASIC1.63□□□□□ -2.15
CHMP4AQ9BY43 RNU6-1145P-201ENST00000384246 107 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 MIR520G-201ENST00000385064 90 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 MT-TL1-201ENST00000386347 75 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 Y_RNA.599-201ENST00000410489 109 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 ELOCP21-201ENST00000412558 336 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 MTND1P2-201ENST00000430604 821 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 AC004223.1-201ENST00000479840 271 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 RPL17P19-201ENST00000489069 552 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 AL133373.1-201ENST00000497098 94 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 AC116353.2-201ENST00000505332 712 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 AC105758.1-201ENST00000506038 399 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 MIR4661-201ENST00000582720 75 ntBASIC1.62□□□□□ -2.15
CHMP4AQ9BY43 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 Y_RNA.279-201ENST00000364763 95 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 RNU6-407P-201ENST00000365280 104 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 SNORA20B-201ENST00000384220 132 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 MIR19B1-201ENST00000384829 87 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 RNU4-14P-201ENST00000410858 122 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 PCNPP5-201ENST00000452246 481 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 Y_RNA.635-201ENST00000459041 101 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 RNA5SP61-201ENST00000516453 100 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 RNU6-165P-201ENST00000517170 99 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 AC018448.1-201ENST00000552843 316 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CHMP4AQ9BY43 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 RNU6-99P-201ENST00000364721 107 ntBASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 RNU6-424P-201ENST00000384367 105 ntBASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 Y_RNA.505-201ENST00000384489 102 ntBASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 AL355796.1-201ENST00000406706 323 ntBASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 MIR2053-201ENST00000459295 91 ntBASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 UBL5P1-201ENST00000507979 193 ntBASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.6□□□□□ -2.15
CHMP4AQ9BY43 RNU4-79P-201ENST00000362764 141 ntBASIC1.59□□□□□ -2.15
CHMP4AQ9BY43 RNU6-370P-201ENST00000411008 104 ntBASIC1.59□□□□□ -2.15
CHMP4AQ9BY43 AC114482.1-201ENST00000418010 247 ntBASIC1.59□□□□□ -2.15
CHMP4AQ9BY43 PDCL2P1-201ENST00000419302 352 ntBASIC1.59□□□□□ -2.15
CHMP4AQ9BY43 RNU6-625P-201ENST00000459412 107 ntBASIC1.59□□□□□ -2.15
CHMP4AQ9BY43 AC005840.1-201ENST00000498412 377 ntBASIC1.59□□□□□ -2.15
CHMP4AQ9BY43 TPTEP1-208ENST00000636884 213 ntBASIC1.59□□□□□ -2.15
CHMP4AQ9BY43 RNU6-376P-201ENST00000384731 106 ntBASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 RNU6-1304P-201ENST00000411374 106 ntBASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 HSPE1P13-201ENST00000451143 297 ntBASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 RNU6-120P-201ENST00000516077 103 ntBASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 RN7SKP49-201ENST00000516675 260 ntBASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 MIR2355-201ENST00000517199 87 ntBASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.58□□□□□ -2.16
CHMP4AQ9BY43 SNORA27.1-201ENST00000362604 124 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 SNORD81.2-201ENST00000365153 76 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 RNU6-1310P-201ENST00000384153 107 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 RNU6-318P-201ENST00000384283 103 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 RNA5SP475-201ENST00000410568 110 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 SNORA40.9-201ENST00000515895 93 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 RNA5SP20-201ENST00000515976 84 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms