Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 FCF1P4-201ENST00000448326 183 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 MTND1P19-201ENST00000511780 315 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-764P-201ENST00000516396 105 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.680-201ENST00000516441 93 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 AC023157.2-201ENST00000540596 141 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 AC004817.2-201ENST00000561794 651 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 AC008269.2-201ENST00000561915 1105 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 SNORD58B-201ENST00000607313 66 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 MIR410-201ENST00000362222 80 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 RNY3P4-201ENST00000384428 101 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-950P-201ENST00000384651 107 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 RNU2-20P-201ENST00000410425 191 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 AL445646.1-201ENST00000431784 216 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 HSPE1P21-201ENST00000438283 308 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 snoU13.9-201ENST00000458927 103 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 RPL26P26-201ENST00000480251 434 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-976P-201ENST00000516086 111 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 RNU7-99P-201ENST00000516271 62 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-911P-201ENST00000516523 104 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 AC113195.1-201ENST00000579952 141 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 MIR3935-201ENST00000583472 104 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 MIR4448-201ENST00000584360 86 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 MIR6715A-201ENST00000615929 79 ntBASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
HERPUD2Q9BSE4 AC091812.1-201ENST00000432235 1948 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 MIR424-201ENST00000362227 98 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 RNU4-42P-201ENST00000364738 142 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 SNORA20B-201ENST00000384220 132 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-472P-201ENST00000384299 107 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 RNA5SP109-201ENST00000391010 116 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 RNU11-5P-201ENST00000391216 129 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 AC096644.2-201ENST00000429278 159 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 JTBP1-201ENST00000441314 247 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 MRPS10P1-201ENST00000448483 130 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 Y_RNA.668-201ENST00000516233 93 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 RNU4-77P-201ENST00000516692 156 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-988P-201ENST00000519081 107 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 MIR4709-201ENST00000577272 72 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 AC100821.1-201ENST00000523153 2479 ntBASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HERPUD2Q9BSE4 Y_RNA.26-201ENST00000362539 101 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-379P-201ENST00000363813 104 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-271P-201ENST00000363858 105 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-407P-201ENST00000365280 104 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 MIR504-201ENST00000385065 83 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 SNORD78.2-201ENST00000391076 69 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 MIR934-201ENST00000401241 83 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-101P-201ENST00000410323 104 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 AC005002.2-201ENST00000438228 269 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 RPS26P45-201ENST00000471748 340 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 AL161670.1-201ENST00000554348 137 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 MIR3668-201ENST00000582138 75 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 VN1R91P-201ENST00000594377 169 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 AC011373.1-201ENST00000607270 237 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 U4.1-201ENST00000620349 87 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 U6.108-201ENST00000637764 58 ntBASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
HERPUD2Q9BSE4 Y_RNA.401-201ENST00000383965 117 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 Y_RNA.574-201ENST00000384766 95 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-1109P-201ENST00000391187 107 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 SUMO2P12-201ENST00000405924 140 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 AL355796.1-201ENST00000406706 323 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 MTCO3P19-201ENST00000415864 321 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2□□□□□ -2.09
HERPUD2Q9BSE4 RNU7-34P-201ENST00000459394 64 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 RNU7-94P-201ENST00000459576 63 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 Y_RNA.721-201ENST00000517207 102 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2□□□□□ -2.09
HERPUD2Q9BSE4 HSBP1P1-201ENST00000555205 166 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 RPL21P9-201ENST00000556149 474 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2□□□□□ -2.09
HERPUD2Q9BSE4 AC006600.1-201ENST00000572529 153 ntBASIC2□□□□□ -2.09
HERPUD2Q9BSE4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2□□□□□ -2.09
HERPUD2Q9BSE4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 SNORA4.2-201ENST00000365313 147 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 Y_RNA.396-201ENST00000383949 103 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 RNU6-823P-201ENST00000391042 103 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 RPL21P1-201ENST00000399532 476 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 MIR548I3-201ENST00000408378 149 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 MIR548I1-201ENST00000408810 149 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 SUMO1P2-201ENST00000452524 304 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 SNORA25.10-201ENST00000515926 124 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 RNA5SP20-201ENST00000515976 84 ntBASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
HERPUD2Q9BSE4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 180.5 ms