Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 LINC01399-202ENST00000458450 244 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 RNU6-221P-201ENST00000459541 99 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 RNY3P15-201ENST00000516297 97 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 RNU6-856P-201ENST00000516959 98 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.72□□□□□ -2.13
USP28Q96RU2 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.72□□□□□ -2.13
USP28Q96RU2 MIR3169-201ENST00000578032 83 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 MIR4423-201ENST00000580922 80 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 MIR4300-201ENST00000581016 96 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 AC005176.2-201ENST00000596933 147 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 Y_RNA.772-201ENST00000606692 102 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 AC130454.1-201ENST00000622948 401 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.72□□□□□ -2.13
USP28Q96RU2 AC245060.5-201ENST00000610778 3293 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
USP28Q96RU2 MIR410-201ENST00000362222 80 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU1-58P-201ENST00000362413 163 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-23P-201ENST00000363283 107 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-238P-201ENST00000363313 106 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-1175P-201ENST00000365200 107 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 SNORA63.7-201ENST00000365579 123 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-1235P-201ENST00000384559 107 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-160P-201ENST00000384591 107 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 MIR568-201ENST00000385036 95 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.71□□□□□ -2.14
USP28Q96RU2 DYNLT3P2-201ENST00000442517 295 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 AL357134.1-201ENST00000445848 426 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-498P-201ENST00000459468 107 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-1045P-201ENST00000516321 107 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 RNU6-635P-201ENST00000516651 102 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 AC025647.1-201ENST00000517879 253 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 CYCSP23-201ENST00000519781 313 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 AC027419.1-201ENST00000522976 328 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 AL117187.1-201ENST00000555482 181 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 AC008269.2-201ENST00000561915 1105 ntBASIC1.71□□□□□ -2.14
USP28Q96RU2 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
USP28Q96RU2 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
USP28Q96RU2 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
USP28Q96RU2 Y_RNA.19-201ENST00000362462 99 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 SNORD81.1-201ENST00000363064 77 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 Y_RNA.133-201ENST00000363428 110 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 SNORA33-201ENST00000363664 130 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 Y_RNA.183-201ENST00000363882 113 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 RNU4-13P-201ENST00000364019 141 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 RNU6-1109P-201ENST00000391187 107 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
USP28Q96RU2 MIR934-201ENST00000401241 83 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 AL355796.1-201ENST00000406706 323 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 Y_RNA.602-201ENST00000410535 92 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 TOMM22P2-201ENST00000430735 237 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 AC114982.1-201ENST00000469402 321 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.7□□□□□ -2.14
USP28Q96RU2 RNU6-1041P-201ENST00000516254 102 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 RNU6-948P-201ENST00000516374 107 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 RNA5SP61-201ENST00000516453 100 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 RNU2-12P-201ENST00000517216 168 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.7□□□□□ -2.14
USP28Q96RU2 MIR4285-201ENST00000581001 85 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 MIR376A1-201ENST00000616574 68 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 AL159152.1-201ENST00000635019 2587 ntBASIC1.7□□□□□ -2.14
USP28Q96RU2 snoU2_19.2-201ENST00000363024 80 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 SNORD113-8-201ENST00000363497 74 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 RNU6-770P-201ENST00000363929 105 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 SNORA72.2-201ENST00000365028 127 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 RNA5SP190-201ENST00000365222 118 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 Y_RNA.446-201ENST00000384178 104 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 RNU6-997P-201ENST00000384725 107 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 SNORD115-46-201ENST00000390982 71 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 RNA5SP475-201ENST00000410568 110 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 AC009310.1-201ENST00000414414 451 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.69□□□□□ -2.14
USP28Q96RU2 SNORD13-201ENST00000459299 104 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 AC023790.1-201ENST00000482174 347 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 AC025465.3-201ENST00000510570 311 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.69□□□□□ -2.14
USP28Q96RU2 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.69□□□□□ -2.14
USP28Q96RU2 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.69□□□□□ -2.14
USP28Q96RU2 AC103810.8-201ENST00000607347 118 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 U6.115-201ENST00000636045 103 ntBASIC1.69□□□□□ -2.14
USP28Q96RU2 Y_RNA.124-201ENST00000363339 93 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 SNORD115-30-201ENST00000364117 82 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 Y_RNA.287-201ENST00000364853 94 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 RNU6-574P-201ENST00000384265 107 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 AC099677.2-201ENST00000436385 175 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 HSPE1P25-201ENST00000455484 251 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.68□□□□□ -2.14
USP28Q96RU2 SNORD65B-201ENST00000459126 73 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.68□□□□□ -2.14
USP28Q96RU2 AC011406.1-201ENST00000512440 370 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 RNU6-155P-201ENST00000516347 100 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 SNORA40.15-201ENST00000516884 107 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 RNU7-110P-201ENST00000516891 62 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.68□□□□□ -2.14
USP28Q96RU2 MIR3145-201ENST00000580727 82 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 AC022441.3-201ENST00000605737 136 ntBASIC1.68□□□□□ -2.14
USP28Q96RU2 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.67□□□□□ -2.14
USP28Q96RU2 Y_RNA.47-201ENST00000362697 108 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms