Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
CLRN3Q8NCR9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.38□□□□□ -2.03
CLRN3Q8NCR9 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 RNU6-103P-201ENST00000363686 107 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 SNORA63D-201ENST00000364359 132 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 RNU6-969P-201ENST00000383900 105 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 RNA5SP496-201ENST00000391240 109 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 COX6CP10-201ENST00000416832 224 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 RNY3P16-201ENST00000516338 101 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 SUB1P4-201ENST00000566062 339 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 MIR3200-201ENST00000580767 85 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 MIR3922-201ENST00000585192 84 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 AL929325.1-201ENST00000603096 117 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 AC072026.1-201ENST00000605023 201 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 AC004792.1-201ENST00000614523 137 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 AC012640.5-201ENST00000623897 319 ntBASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
CLRN3Q8NCR9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 Y_RNA.7-201ENST00000362352 102 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 Y_RNA.24-201ENST00000362508 103 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 Y_RNA.121-201ENST00000363309 113 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 RNU4-41P-201ENST00000364426 143 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 SNORA80E-201ENST00000384744 137 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 MIR200C-201ENST00000384980 68 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 RNU6-381P-201ENST00000391259 108 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AL133547.1-201ENST00000448546 220 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AC023449.1-201ENST00000454464 154 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 RNU7-120P-201ENST00000459334 63 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 RNA5SP82-201ENST00000516707 92 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AC022217.4-201ENST00000604389 163 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AL391903.3-201ENST00000612158 163 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 JPX_2.1-201ENST00000614161 69 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AC008555.8-201ENST00000623602 2168 ntBASIC2.36□□□□□ -2.03
CLRN3Q8NCR9 AC068700.1-201ENST00000565862 3754 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU4-10P-201ENST00000364383 140 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU4-70P-201ENST00000384579 139 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNA5SP109-201ENST00000391010 116 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU6-918P-201ENST00000391219 106 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 PTMAP2-201ENST00000397627 327 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU2-7P-201ENST00000410794 178 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 AL049830.1-201ENST00000468034 425 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU1-95P-201ENST00000516357 160 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU1-128P-201ENST00000516704 160 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 RNU7-28P-201ENST00000516759 62 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 MIR4308-201ENST00000580634 81 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 CTSLP2-204ENST00000629029 392 ntBASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
CLRN3Q8NCR9 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 SNORA1B-201ENST00000362535 133 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 RNU1-35P-201ENST00000362782 153 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 SNORA62.3-201ENST00000365110 153 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 RNU6-1080P-201ENST00000383982 107 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 MIR144-201ENST00000384886 86 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 MIR616-201ENST00000385293 97 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 RNU6-383P-201ENST00000410864 94 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 PIGPP3-201ENST00000425307 415 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 RPS27P1-201ENST00000450552 247 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 SNORA9.3-201ENST00000516383 129 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 RNU6-1007P-201ENST00000516586 107 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 RNA5SP481-201ENST00000516814 122 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 Y_RNA.714-201ENST00000517065 90 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 SNORA28-201ENST00000606769 126 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 AL137847.3-201ENST00000611521 109 ntBASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.34□□□□□ -2.03
CLRN3Q8NCR9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 RNU6-112P-201ENST00000363599 104 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.238-201ENST00000364441 102 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP51-201ENST00000364750 119 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 RNU6-47P-201ENST00000383866 107 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 U8.11-201ENST00000384699 133 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 Y_RNA.571-201ENST00000384753 98 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 MIR218-2-201ENST00000385006 110 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 RNA5SP482-201ENST00000391269 118 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 RN7SKP101-201ENST00000411376 320 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 U8.18-201ENST00000459285 133 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 HMGN1P7-201ENST00000491722 313 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 RNU1-45P-201ENST00000517191 141 ntBASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CLRN3Q8NCR9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms