Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.95□□□□□ -1.94
RNF4P78317 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.95□□□□□ -1.94
RNF4P78317 SNORD11-201ENST00000459124 84 ntBASIC2.95□□□□□ -1.94
RNF4P78317 RNU6-1041P-201ENST00000516254 102 ntBASIC2.95□□□□□ -1.94
RNF4P78317 RN7SKP57-201ENST00000517248 293 ntBASIC2.95□□□□□ -1.94
RNF4P78317 AC090142.3-201ENST00000519012 385 ntBASIC2.95□□□□□ -1.94
RNF4P78317 uc_338.4-201ENST00000616635 176 ntBASIC2.95□□□□□ -1.94
RNF4P78317 TUG1_4.1-201ENST00000619464 181 ntBASIC2.95□□□□□ -1.94
RNF4P78317 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
RNF4P78317 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
RNF4P78317 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
RNF4P78317 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
RNF4P78317 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.94□□□□□ -1.94
RNF4P78317 Y_RNA.251-201ENST00000364551 99 ntBASIC2.94□□□□□ -1.94
RNF4P78317 RNA5SP205-201ENST00000364653 136 ntBASIC2.94□□□□□ -1.94
RNF4P78317 MIR491-201ENST00000384877 84 ntBASIC2.94□□□□□ -1.94
RNF4P78317 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
RNF4P78317 AL513477.1-202ENST00000417061 214 ntBASIC2.94□□□□□ -1.94
RNF4P78317 AC003685.2-201ENST00000422795 395 ntBASIC2.94□□□□□ -1.94
RNF4P78317 AC115115.1-201ENST00000449927 248 ntBASIC2.94□□□□□ -1.94
RNF4P78317 SNORD77.4-201ENST00000516158 81 ntBASIC2.94□□□□□ -1.94
RNF4P78317 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.94□□□□□ -1.94
RNF4P78317 MIR2681-201ENST00000581814 105 ntBASIC2.94□□□□□ -1.94
RNF4P78317 MIR8057-201ENST00000620957 69 ntBASIC2.94□□□□□ -1.94
RNF4P78317 AC073476.4-201ENST00000628409 72 ntBASIC2.94□□□□□ -1.94
RNF4P78317 AC093908.1-201ENST00000623125 8092 ntBASIC2.94□□□□□ -1.94
RNF4P78317 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
RNF4P78317 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
RNF4P78317 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
RNF4P78317 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.93□□□□□ -1.94
RNF4P78317 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
RNF4P78317 MIR148B-201ENST00000362252 99 ntBASIC2.93□□□□□ -1.94
RNF4P78317 RNU6-915P-201ENST00000364943 103 ntBASIC2.93□□□□□ -1.94
RNF4P78317 SNORA25B-201ENST00000365507 128 ntBASIC2.93□□□□□ -1.94
RNF4P78317 RNU6-597P-201ENST00000365620 102 ntBASIC2.93□□□□□ -1.94
RNF4P78317 SNORA9-201ENST00000384215 133 ntBASIC2.93□□□□□ -1.94
RNF4P78317 SNORA7.4-201ENST00000384249 137 ntBASIC2.93□□□□□ -1.94
RNF4P78317 RNA5SP467-201ENST00000391274 118 ntBASIC2.93□□□□□ -1.94
RNF4P78317 RNU2-70P-201ENST00000410718 179 ntBASIC2.93□□□□□ -1.94
RNF4P78317 AC023449.1-201ENST00000454464 154 ntBASIC2.93□□□□□ -1.94
RNF4P78317 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.93□□□□□ -1.94
RNF4P78317 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.93□□□□□ -1.94
RNF4P78317 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.93□□□□□ -1.94
RNF4P78317 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
RNF4P78317 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.93□□□□□ -1.94
RNF4P78317 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.93□□□□□ -1.94
RNF4P78317 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.92□□□□□ -1.94
RNF4P78317 RNA5SP374-201ENST00000362939 125 ntBASIC2.92□□□□□ -1.94
RNF4P78317 Y_RNA.111-201ENST00000363248 100 ntBASIC2.92□□□□□ -1.94
RNF4P78317 RNU6-978P-201ENST00000364371 103 ntBASIC2.92□□□□□ -1.94
RNF4P78317 RNU2-55P-201ENST00000411146 174 ntBASIC2.92□□□□□ -1.94
RNF4P78317 RNA5SP492-201ENST00000411330 114 ntBASIC2.92□□□□□ -1.94
RNF4P78317 Y_RNA.629-201ENST00000411368 105 ntBASIC2.92□□□□□ -1.94
RNF4P78317 AC245047.4-201ENST00000433189 144 ntBASIC2.92□□□□□ -1.94
RNF4P78317 RPL23AP83-201ENST00000434984 473 ntBASIC2.92□□□□□ -1.94
RNF4P78317 AC233266.1-201ENST00000454518 96 ntBASIC2.92□□□□□ -1.94
RNF4P78317 RNU6-1146P-201ENST00000516282 102 ntBASIC2.92□□□□□ -1.94
RNF4P78317 RNU6-1291P-201ENST00000516591 104 ntBASIC2.92□□□□□ -1.94
RNF4P78317 RNU7-128P-201ENST00000517247 62 ntBASIC2.92□□□□□ -1.94
RNF4P78317 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.92□□□□□ -1.94
RNF4P78317 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.92□□□□□ -1.94
RNF4P78317 AC007229.1-201ENST00000590455 412 ntBASIC2.92□□□□□ -1.94
RNF4P78317 AL359881.1-201ENST00000602916 267 ntBASIC2.92□□□□□ -1.94
RNF4P78317 AC242852.1-201ENST00000612151 96 ntBASIC2.92□□□□□ -1.94
RNF4P78317 AC244015.1-201ENST00000622301 99 ntBASIC2.92□□□□□ -1.94
RNF4P78317 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.92□□□□□ -1.94
RNF4P78317 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
RNF4P78317 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
RNF4P78317 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
RNF4P78317 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
RNF4P78317 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
RNF4P78317 SNORA33-201ENST00000363664 130 ntBASIC2.91□□□□□ -1.94
RNF4P78317 Y_RNA.294-201ENST00000364916 102 ntBASIC2.91□□□□□ -1.94
RNF4P78317 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
RNF4P78317 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.91□□□□□ -1.94
RNF4P78317 AC063976.3-201ENST00000426849 329 ntBASIC2.91□□□□□ -1.94
RNF4P78317 EEF1B2P7-201ENST00000451177 676 ntBASIC2.91□□□□□ -1.94
RNF4P78317 RNU7-149P-201ENST00000516739 59 ntBASIC2.91□□□□□ -1.94
RNF4P78317 UBL5P2-201ENST00000583788 219 ntBASIC2.91□□□□□ -1.94
RNF4P78317 U7.2-201ENST00000607576 63 ntBASIC2.91□□□□□ -1.94
RNF4P78317 JPX_2.1-201ENST00000614161 69 ntBASIC2.91□□□□□ -1.94
RNF4P78317 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.91□□□□□ -1.94
RNF4P78317 AP001340.1-201ENST00000624405 217 ntBASIC2.91□□□□□ -1.94
RNF4P78317 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
RNF4P78317 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
RNF4P78317 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
RNF4P78317 Y_RNA.81-201ENST00000362997 102 ntBASIC2.9□□□□□ -1.95
RNF4P78317 SNORA25.7-201ENST00000364375 127 ntBASIC2.9□□□□□ -1.95
RNF4P78317 SNORD114-6-201ENST00000364393 72 ntBASIC2.9□□□□□ -1.95
RNF4P78317 Y_RNA.634-201ENST00000364811 113 ntBASIC2.9□□□□□ -1.95
RNF4P78317 RNU6-80P-201ENST00000384195 107 ntBASIC2.9□□□□□ -1.95
RNF4P78317 SNORD15B-201ENST00000384714 146 ntBASIC2.9□□□□□ -1.95
RNF4P78317 MIR562-201ENST00000384894 95 ntBASIC2.9□□□□□ -1.95
RNF4P78317 MIR520G-201ENST00000385064 90 ntBASIC2.9□□□□□ -1.95
RNF4P78317 Y_RNA.584-201ENST00000391090 114 ntBASIC2.9□□□□□ -1.95
RNF4P78317 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.9□□□□□ -1.95
RNF4P78317 EDDM3CP-201ENST00000415977 425 ntBASIC2.9□□□□□ -1.95
RNF4P78317 RPS15AP28-201ENST00000435088 386 ntBASIC2.9□□□□□ -1.95
RNF4P78317 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.9□□□□□ -1.95
RNF4P78317 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms