Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 RNA5SP393-201ENST00000363423 117 ntBASIC2.57□□□□□ -2
CLK3P49761 RNU6-44P-201ENST00000384045 107 ntBASIC2.57□□□□□ -2
CLK3P49761 Y_RNA.542-201ENST00000384641 111 ntBASIC2.57□□□□□ -2
CLK3P49761 MIR592-201ENST00000384959 97 ntBASIC2.57□□□□□ -2
CLK3P49761 MIR548B-201ENST00000385247 97 ntBASIC2.57□□□□□ -2
CLK3P49761 SNORD37.2-201ENST00000391075 66 ntBASIC2.57□□□□□ -2
CLK3P49761 Z92545.1-201ENST00000411782 234 ntBASIC2.57□□□□□ -2
CLK3P49761 COTL1P1-201ENST00000422309 375 ntBASIC2.57□□□□□ -2
CLK3P49761 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.57□□□□□ -2
CLK3P49761 AL139132.1-201ENST00000431587 344 ntBASIC2.57□□□□□ -2
CLK3P49761 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.57□□□□□ -2
CLK3P49761 AC091826.1-201ENST00000514065 313 ntBASIC2.57□□□□□ -2
CLK3P49761 RPPH1-2P-201ENST00000516688 293 ntBASIC2.57□□□□□ -2
CLK3P49761 MIR4724-201ENST00000579485 89 ntBASIC2.57□□□□□ -2
CLK3P49761 AC025754.2-201ENST00000606491 432 ntBASIC2.57□□□□□ -2
CLK3P49761 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.57□□□□□ -2
CLK3P49761 MIR5739-201ENST00000619803 80 ntBASIC2.57□□□□□ -2
CLK3P49761 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.57□□□□□ -2
CLK3P49761 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.57□□□□□ -2
CLK3P49761 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.56□□□□□ -2
CLK3P49761 RNU1-72P-201ENST00000362976 153 ntBASIC2.56□□□□□ -2
CLK3P49761 Y_RNA.229-201ENST00000364347 113 ntBASIC2.56□□□□□ -2
CLK3P49761 RNU6-407P-201ENST00000365280 104 ntBASIC2.56□□□□□ -2
CLK3P49761 MIR15B-201ENST00000385045 98 ntBASIC2.56□□□□□ -2
CLK3P49761 SUMO1P4-201ENST00000429430 302 ntBASIC2.56□□□□□ -2
CLK3P49761 CKS1BP2-201ENST00000497342 240 ntBASIC2.56□□□□□ -2
CLK3P49761 RNU6-1234P-201ENST00000516877 103 ntBASIC2.56□□□□□ -2
CLK3P49761 ELOCP29-201ENST00000588193 334 ntBASIC2.56□□□□□ -2
CLK3P49761 AL449363.1-201ENST00000617815 186 ntBASIC2.56□□□□□ -2
CLK3P49761 AC090517.3-201ENST00000625170 141 ntBASIC2.56□□□□□ -2
CLK3P49761 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
CLK3P49761 MIR367-201ENST00000362299 68 ntBASIC2.55□□□□□ -2
CLK3P49761 snoU2_19.1-201ENST00000362361 80 ntBASIC2.55□□□□□ -2
CLK3P49761 RNU6-1325P-201ENST00000364905 105 ntBASIC2.55□□□□□ -2
CLK3P49761 RNU6-728P-201ENST00000365375 104 ntBASIC2.55□□□□□ -2
CLK3P49761 DEFA7P-201ENST00000382676 285 ntBASIC2.55□□□□□ -2
CLK3P49761 MIR586-201ENST00000385035 97 ntBASIC2.55□□□□□ -2
CLK3P49761 MT-TT-201ENST00000387460 66 ntBASIC2.55□□□□□ -2
CLK3P49761 AL606845.1-201ENST00000404881 255 ntBASIC2.55□□□□□ -2
CLK3P49761 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.55□□□□□ -2
CLK3P49761 AC090515.1-201ENST00000465295 476 ntBASIC2.55□□□□□ -2
CLK3P49761 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.55□□□□□ -2
CLK3P49761 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.55□□□□□ -2
CLK3P49761 RNU4-57P-201ENST00000515980 135 ntBASIC2.55□□□□□ -2
CLK3P49761 Y_RNA.686-201ENST00000516548 134 ntBASIC2.55□□□□□ -2
CLK3P49761 HSPE1P18-201ENST00000517602 280 ntBASIC2.55□□□□□ -2
CLK3P49761 AP001340.1-201ENST00000624405 217 ntBASIC2.55□□□□□ -2
CLK3P49761 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
CLK3P49761 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.55□□□□□ -2
CLK3P49761 AL159152.1-201ENST00000635019 2587 ntBASIC2.55□□□□□ -2
CLK3P49761 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.54□□□□□ -2
CLK3P49761 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.54□□□□□ -2
CLK3P49761 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.54□□□□□ -2
CLK3P49761 RNY3P5-201ENST00000384127 102 ntBASIC2.54□□□□□ -2
CLK3P49761 RNU2-63P-201ENST00000410792 194 ntBASIC2.54□□□□□ -2
CLK3P49761 CYP2C59P-201ENST00000457790 269 ntBASIC2.54□□□□□ -2
CLK3P49761 AC092991.1-201ENST00000477176 376 ntBASIC2.54□□□□□ -2
CLK3P49761 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.54□□□□□ -2
CLK3P49761 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.54□□□□□ -2
CLK3P49761 AC011603.4-201ENST00000611325 277 ntBASIC2.54□□□□□ -2
CLK3P49761 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.54□□□□□ -2
CLK3P49761 AC012640.5-201ENST00000623897 319 ntBASIC2.54□□□□□ -2
CLK3P49761 MIR6844-201ENST00000637122 62 ntBASIC2.54□□□□□ -2
CLK3P49761 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.54□□□□□ -2
CLK3P49761 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
CLK3P49761 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.54□□□□□ -2
CLK3P49761 RNU6-525P-201ENST00000363685 104 ntBASIC2.53□□□□□ -2
CLK3P49761 RNU6-1305P-201ENST00000364353 104 ntBASIC2.53□□□□□ -2
CLK3P49761 Y_RNA.563-201ENST00000384707 108 ntBASIC2.53□□□□□ -2
CLK3P49761 MIR29B2-201ENST00000385055 81 ntBASIC2.53□□□□□ -2
CLK3P49761 MIR1185-2-201ENST00000408687 86 ntBASIC2.53□□□□□ -2
CLK3P49761 RNA5SP181-201ENST00000410246 98 ntBASIC2.53□□□□□ -2
CLK3P49761 RNU4-43P-201ENST00000410628 137 ntBASIC2.53□□□□□ -2
CLK3P49761 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.53□□□□□ -2
CLK3P49761 AC107083.1-201ENST00000439643 279 ntBASIC2.53□□□□□ -2
CLK3P49761 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.53□□□□□ -2
CLK3P49761 AC104389.3-201ENST00000445629 235 ntBASIC2.53□□□□□ -2
CLK3P49761 RPS27P1-201ENST00000450552 247 ntBASIC2.53□□□□□ -2
CLK3P49761 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.53□□□□□ -2
CLK3P49761 RNU6-561P-201ENST00000516222 102 ntBASIC2.53□□□□□ -2
CLK3P49761 RNU6-659P-201ENST00000516454 104 ntBASIC2.53□□□□□ -2
CLK3P49761 SNORA31.11-201ENST00000516528 139 ntBASIC2.53□□□□□ -2
CLK3P49761 RNU6-586P-201ENST00000517265 104 ntBASIC2.53□□□□□ -2
CLK3P49761 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.53□□□□□ -2
CLK3P49761 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.53□□□□□ -2
CLK3P49761 MIR7106-201ENST00000612419 65 ntBASIC2.53□□□□□ -2
CLK3P49761 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.53□□□□□ -2
CLK3P49761 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CLK3P49761 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
CLK3P49761 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.53□□□□□ -2.01
CLK3P49761 RNU6-153P-201ENST00000364422 104 ntBASIC2.52□□□□□ -2.01
CLK3P49761 U8.7-201ENST00000364940 136 ntBASIC2.52□□□□□ -2.01
CLK3P49761 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CLK3P49761 Y_RNA.393-201ENST00000383936 102 ntBASIC2.52□□□□□ -2.01
CLK3P49761 RNU6-768P-201ENST00000384683 107 ntBASIC2.52□□□□□ -2.01
CLK3P49761 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CLK3P49761 SNORA12-201ENST00000391162 147 ntBASIC2.52□□□□□ -2.01
CLK3P49761 AL138827.1-201ENST00000402666 306 ntBASIC2.52□□□□□ -2.01
CLK3P49761 HSPE1P21-201ENST00000438283 308 ntBASIC2.52□□□□□ -2.01
CLK3P49761 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms